Gene Caci_2196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_2196 
Symbol 
ID8333541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp2490465 
End bp2491199 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content73% 
IMG OID644955346 
ProductMgtC/SapB transporter 
Protein accessionYP_003112956 
Protein GI256391392 
COG category[S] Function unknown 
COG ID[COG1285] Uncharacterized membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACTCAG TGGGGTCCGT CCTACTGGCG GCCGTTCCGT CGGCCGACAA CATCCACGTC 
CCGACCCACT GGGACGCGGT CGGGCGCATC GCCCTGGCCT GGGCGCTGAC CTTCGCGCTG
GGCTTCGAGC GGCAGATCCG CGGCGCGATG GCCGGGGACC GGACCTTCTC GCTGCTGGGC
GCGGCCACGG CGCTGATAGG CGTGCTGGCC GGCAACGGCG CCAGCACCAT CCTGGCCGGC
GCGGTCACCG GCATCGGCTT CATCGGCGGC GGGCTGTGCT TCCGGCAGAC CGTCCAGGAG
CACGAGGTGC TGCACGGCAT CACCACCGCG GCGAGCATCT TCGCCTGCTC GGCGATCGGC
GCGGCGTGCG GCCTGGGACT GGTGAAGGAG TCGATCACCG CGACCGCGGC CACGCTGCTC
ACCCTGGAGC TGCGCCACAT CCCGCTGATC CGCACGCTCG ACGCGCGCCG CTGGAACGGC
CTGGTGCACC ACGACGAGCA TGTGCACTCG CAGATCCTCA AGCGCGGCAC CAGGATCTCC
TCGCAGATGG CCGAGGCCCG GGTGGCGACC GCCGACACCG CGGACAGCGA CGCCGTGGTG
CTCATCAACC CGGTGATCGC CGCGCAGCAG GCGGCCGCGG CCACGGCGGC GACGGTCATG
CCCGAGGCGC CGGTGATGGT CGACGCCGTG GCGGCCGACA GCGGCGCGGC CGCGACACCG
GCCGGGAAGC AGTAG
 
Protein sequence
MHSVGSVLLA AVPSADNIHV PTHWDAVGRI ALAWALTFAL GFERQIRGAM AGDRTFSLLG 
AATALIGVLA GNGASTILAG AVTGIGFIGG GLCFRQTVQE HEVLHGITTA ASIFACSAIG
AACGLGLVKE SITATAATLL TLELRHIPLI RTLDARRWNG LVHHDEHVHS QILKRGTRIS
SQMAEARVAT ADTADSDAVV LINPVIAAQQ AAAATAATVM PEAPVMVDAV AADSGAAATP
AGKQ