Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_2036 |
Symbol | |
ID | 8333380 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 2307115 |
End bp | 2307756 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644955186 |
Product | transcriptional regulator, GntR family |
Protein accession | YP_003112797 |
Protein GI | 256391233 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00223971 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0618137 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGATCG AGCGGCGGCC GCTCCGCGAG CAGATCAAGG ACGTGCTCCT CGAACGCCTG GGGCGGGGGG AGTACGCCCC CGACCAGCCG ATCAACGAGG TGCACCTGGC TGCTGACCTG GGCGTCAGCC GCACCCCCCT GCGCGAGGCG CTGATCGGCC TGGAACGCGA GGGCATCATC ATCAGCGAAC GCGGCAAGGG CTTCCGCTTC GCGCCGATGA GCCCGCAGGA GTTCCGCGAC CTGACGACGA TCATCGCCAC CCTCGAATCA CTGGCGCTGG AGCTGTCCCC GCCCGAGTAC CTCAAGCACA TCGGCCCGCA GCTGCTTGAG GAGGCGCACG CCTTCTCCGC GCCGAAGGCC GAGCTCGGCG TGATAGAGCG CTACGACGAC GAGTGGCACG ACCGGCTCCT CTCGGGCTGC CGCAACGACC GGCTGATGGA CCTGATCACG ACCCTGAAGC TGACGATGCA CCGCTACGAG CGCGTGGTCG TCGGCGACCA GCAGGTGCTT GAACGATCGG CGGTGGAGCA CGAGAAGATC GCCGAATGCC TGGTCGCCGA GGATCTGCCG GGCGCGGTCG CGGCGCTGAA GGCGAATTGG GAGAGCGGGA TGCATCGGAT TCTGGAGAAG TTGGGGGCGT AG
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Protein sequence | MAIERRPLRE QIKDVLLERL GRGEYAPDQP INEVHLAADL GVSRTPLREA LIGLEREGII ISERGKGFRF APMSPQEFRD LTTIIATLES LALELSPPEY LKHIGPQLLE EAHAFSAPKA ELGVIERYDD EWHDRLLSGC RNDRLMDLIT TLKLTMHRYE RVVVGDQQVL ERSAVEHEKI AECLVAEDLP GAVAALKANW ESGMHRILEK LGA
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