| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1976 |
|---|
| Symbol | |
|---|
| ID | 8333319 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2233246 |
|---|
| End bp | 2234298 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644955125 |
|---|
| Product | Ornithine cyclodeaminase |
|---|
| Protein accession | YP_003112737 |
|---|
| Protein GI | 256391173 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2423] Predicted ornithine cyclodeaminase, mu-crystallin homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.100827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG CGTCCAACGT CGGGCTGCCG ATATTCGACG CCGCCGAGAT CCGCGCCGCC
GTCGGCTTCG AGGACCTGGT CGAACCCGTC GCGCGCGCCT TCGCCGACTA CAGCCAGGGT
CTCGGCGAGT CGCCGGTCTC GGTGTTCGCT CCCGCTGGAC GGGACGGGGA CGTGCACGTC
AAATCCGCCT GGCTGCCCGG CTCACCGATC TTCGTCGTCA AAGTAGGCAG CTGGTTCGCC
GAACGTGCGC GCCTCACCGG CAACGGCGCG AGCGGCATGA TCCTGGCTTT CGACGCGCAG
ACCGGCGATC CGGTCGCCCT ACTCCGCGAC GACCACCATC TGTCCGACGT ACGAACCGCA
GCCGCCGGCG CGCTCGCCAC ACGGCTGCTG GCACGCCAAA ACAGCAGCAC CATCGGCGTG
CTCGGCACCG GAGTCCAGGC ATACCTCCAA GTCCTCGAGG CAGCTGCCGA GCGTCCCATC
ACCTCCGTCC GGATCTGGGG ACGGCGAGCC GAACCCGCAC AGCGCGTCGC CACCGCCCTA
CGGCGACGCC TACCCGGAGT GGACGTCCTA GAGGTACCGA CAGCGCGTGA AGCCTGTGCC
GGCGTTGACA TTTTGATCAC AGCCACCGGC AGTACGCAGC CGTTGGTCGA GCCCGACTGG
CTCGCGCCCG GCACGCACGT GACCTCGATC GGCGCCGACG ACGCGGGCAA GGTCGAACTC
GCTCCCGGCT GCCTCGCACG CGCCGACCTG GTCGTCGTGG ACAGCCGCCA ACTAACCGTC
CTGTACGGCG ATCTCGCCTA CGCGCAGCAC GCCGGAGTGC GGCTGAAGGC TCTGCCGACC
GAACTCGGCG ACCTCATCGC CGGACGGACC CCGGGTCGCG CCGCCGATGA GCAGATCACC
GTGTGCAAGC TGATCGGCTT GGGCGTGCAG GACCTGGCAG CGGCGAACAC CACGCTGGAG
CGCCTGAACA GCGCGGACGC CCCGAACCAC TCGGACGATT CCCCCGCTCC CCACCGTCAG
CCAGCCAGCG CAGTGGATCT GTCCTGGCGT TGA
|
|---|
| Protein sequence | MSTASNVGLP IFDAAEIRAA VGFEDLVEPV ARAFADYSQG LGESPVSVFA PAGRDGDVHV
KSAWLPGSPI FVVKVGSWFA ERARLTGNGA SGMILAFDAQ TGDPVALLRD DHHLSDVRTA
AAGALATRLL ARQNSSTIGV LGTGVQAYLQ VLEAAAERPI TSVRIWGRRA EPAQRVATAL
RRRLPGVDVL EVPTAREACA GVDILITATG STQPLVEPDW LAPGTHVTSI GADDAGKVEL
APGCLARADL VVVDSRQLTV LYGDLAYAQH AGVRLKALPT ELGDLIAGRT PGRAADEQIT
VCKLIGLGVQ DLAAANTTLE RLNSADAPNH SDDSPAPHRQ PASAVDLSWR
|
|---|
| |