| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1451 |
|---|
| Symbol | |
|---|
| ID | 8332790 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1654369 |
|---|
| End bp | 1655766 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644954599 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_003112215 |
|---|
| Protein GI | 256390651 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.815185 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTCCG AGCACAGCTT CCGCCCGACG GCCGAGGACG CACGGTTGCT GAAGCTCGCG
CTGCCGGCGT TGGGGAACCT CGTCGCCGAG CCGTTGTTCC TGCTCGCGGA CTCCGCGATC
GTCGGGCATC TCGGGACTCC GCAACTGGCC GGGCTGGCGG CGGCGAGTGC GTTGCTGGCG
ACGCTGACGT ACCTGTGCGT GTTCCTTGCT TATGGGACGA CAGCTGCCGT CGGGCGCCGG
ATCGGCGCGG GGGACCTGCC GGGCGCGGTG CGGCAGGGCG TGGACGGGAT GTGGCTCGGC
GTGATCCTCG GCGTGGTGCT GGGACTCGCC GGGATCGTGT TCGCCGCGCC GCTGGTGCGG
GTGTTCGGGG CGTCGCCTGA GGCGGTGCCT TATGGCGTGA CGTATCTGCG GATCGCCTCT
ATCGGACAGC CGGCGATGCT CCTAGTGCTC GCCTCTACAG GAGTCCTGCG AGGTCTGCAG
GACATTCGCA CGACACTTGT AGTGGCGGCG ACCGGCGCCG GGATGAACGT CGTGCTGAAC
CTGGTGCTCG TCTATCCCGT GGGGATGGGG ATCGCGGGGT CCGCCACCGG GACGGTCCTT
GTGCAGTACG GGATGGCGGC TGCGTACGCA GTGGTCGTCT ATAAGGCGGC GCGTAAATAT
GATGCGCCGC TCAAGCCAGA CTTCGAGGGG ATCAAGCAGG CCGCGACCGC CTCGATCCCC
TTGCTGATCC GCACGATACT GCTGCGCATC GCACTGCTTG CCGGGACGAT CCTTGCCGCG
CGCTATGGGA CGGAAGCACT GGCGGCACAA CAGGTCGCAT GGTCCCTATG GGGTTTCCTA
GGGCTGGTGC TGGACGCGCT GGCGATCGCC GGGCAGGCGT GGATCTCGCA GTTGCTCGGG
GCGTCGGACG TAGCGGGCGC GCGGCGGGCG ACGCGCCGGA CGATCGAGTG GGGCGTGGTG
CTCGGCGTGC TGCTCGCCCT GGTGGTGCTG GCGACGCGGC AAGGGTTCAT CCCGCTGTTC
ACCGAGGATC AGACGGTCCG GAATCTGCTG GAGGACGTGC TGCTGCTGGA GGCGCTGTTC
CTGCCGATCG CCGCGCCGGT GTTCGTCCTC GACGGCCTGC TCATCGGCGC CGGCGACGGC
CGGTTCCTGG CGTGGGCCGG CATCGCGACC ACCAGCGCCT ACCTGGCCGC CGCGCTCGGT
TCGTACCACC TGGACCAAGG GCTGACCGGC TTGTGGTGGG CCCTCGGGGT GTTCATGCTC
GCGCGCCTCA TCGCGCTCGG GACACGCATC CGGACCGACC AGTGGATCGT GACCGGCGCC
GATCGCGGCG CGAGCGGTGC GGGAACGGAG GACGCGACAG CCGCCGCGGA GGTCGCGGCG
GTGACGCAGA CGCCTTAG
|
|---|
| Protein sequence | MTSEHSFRPT AEDARLLKLA LPALGNLVAE PLFLLADSAI VGHLGTPQLA GLAAASALLA
TLTYLCVFLA YGTTAAVGRR IGAGDLPGAV RQGVDGMWLG VILGVVLGLA GIVFAAPLVR
VFGASPEAVP YGVTYLRIAS IGQPAMLLVL ASTGVLRGLQ DIRTTLVVAA TGAGMNVVLN
LVLVYPVGMG IAGSATGTVL VQYGMAAAYA VVVYKAARKY DAPLKPDFEG IKQAATASIP
LLIRTILLRI ALLAGTILAA RYGTEALAAQ QVAWSLWGFL GLVLDALAIA GQAWISQLLG
ASDVAGARRA TRRTIEWGVV LGVLLALVVL ATRQGFIPLF TEDQTVRNLL EDVLLLEALF
LPIAAPVFVL DGLLIGAGDG RFLAWAGIAT TSAYLAAALG SYHLDQGLTG LWWALGVFML
ARLIALGTRI RTDQWIVTGA DRGASGAGTE DATAAAEVAA VTQTP
|
|---|
| |