| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_1234 |
|---|
| Symbol | |
|---|
| ID | 8332569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 1399746 |
|---|
| End bp | 1402244 |
|---|
| Gene Length | 2499 bp |
|---|
| Protein Length | 832 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644954381 |
|---|
| Product | Tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_003112000 |
|---|
| Protein GI | 256390436 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.840453 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00091605 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGGACGAGG CCGAGAGCGC TCCCCGGGAT CCGCGCGCGC TGCTGGCTGC CGAGTTGCTG
GCGGTGCAGG AGGCCACCGG GCTCAGTCTC AAGGAGTTGG AGCGGGTCAC GCACGTCAGC
GACTCGTCCT TGTCCCGTTA CCTGGCCGGA CGTTCGGTGC CGCCGTGGAC GGTGGTGCAG
GCGATGAGCC GCTTGGCGCG CCGCGATCCC GACGGGCTGC GCACGGCCTG GGCGGCGGCA
CGCGGCGCGC GGCTGAACGT GCCGCGCGGC GTGGCGGGTA TCTCGGGCGG CGTCGCGGGC
GGCGTCGGCG GCGTCGGCGG TGCCACCGGG TTGGGGCGCG ACGACCTTCC GCGCGCCCCC
CTCGGTTTCG TCGGACGCCG TCCGGAACTG GCGACTCTGG TCACGACGCC CGGGGTCTGG
GTCGTGGACG GCATGGCGGG GGTCGGCAAG AGCACGCTGG CGGTGCGCGC CGCGCGGGCC
CTGGCCGAGG CGGAGCGTCG CAGGACCCTG TATCTCCATC TGCACGGGCA CACCTCGCAT
CGCGCGCCGC TGGCGCCGGA GGCCGCGCTG ACGGCGCTGC TGAGCGCGAT CGGCGTGCCG
GACAAGCGGA TTCCGGAGGA TCCGGACCTG CGGGCCGCGT TGTGGCGGGG CGAGGCGGCG
CGGCGGACGC CGGTGGTCGT GCTCGACGAC GCCGTGGACT CCGCGCAGGT GCGTCCGCTG
CTGCCGGGTG CGGCGGACGC CGTGGTGCTG GTGACGAGCC GGCGGCGGTT GGTGTCGCTG
GAGGGCGCGC GGTCGCTGAC GCTGGCGGTG CCCTCGCTGC CGGAGTGCCG CGAGCTGGTG
GACGTGATCG CCGGGCCGGA GCGGCGGGCG GCCGAGCCGG AGGCCGTGGA CGCGATCATC
GAGGCGTGCG GCCGGCTGCC GCTGGCGGTG CAGCTGTGCG CGGCGCGGTT GCGGCACCGG
CCGGCGTGGA GCGCGGCGTT CCTGGCCGAG CGGCTGCGGG ACGAGGAGCG CCGGCGCCGT
GAGCTGGCGG CGGACGGCGG CGGCGTGGGC GCGGCACTTG CGTTGTCAGT GGCGCACCTG
AGGGAGACCG AGCGCGCCGG GTTCGCGCTG CTCGGGTCGC TGCCGGGCCT GGACTTCGAC
GTCTACGCCG CCGCCGCGCT GATCGACGCG CATCCGGCGG ACGCCGAGGA CCTGTTGCAG
ACGCTGGTGG ACGCGCACCT GCTCGACGAG TCGGCGGCCG GACGCTACCG CTTGCACGAC
CTGACGCGCG ACCACGCGCG GGCCATGGCG GACCCGGCGC GCGCGGCGGC GGAGCGGCGT
CTGGTGGACT ACCACATCGC GGCGGCGGCT GCGGCGTCGA CGGCGTTCGA TCCGTACGGC
TCGGCCCGGA TCGGCCTGAT CCAGCCCGGC CTTCCCGACG ACCGCCTGCC GGACTTCGCG
GACGCCGCGG AAGGCGGAGC CTGGTTCGAG GAGCATCTCC CGACCCTGAT CCACCTGTCC
GGGACCGCCC TCGACGCACG GTCGCTGGCA CTGCTGCGCA ACAGCGTCTG CTTCCTGTGG
ACGAGCGGCC AGCCCGCCGC CATGACCGCC CTGGGCCACC TCGCCCGAAC CGGCACCCGC
TCCCCCGGCG CGGAAGAAGA CCACGCCTGG GCCGCGCGCA TGCTGGGCAT CGCATCCCTG
ATCGCGGGGC GCCCCGAGGA AGCCATCGAG CACTTCGAGA CCGCGCTGAT CGGCGCCGGC
GAGACCCTGC GCGCCACCCT GATCGGCGCC CTGTCCATCA CCGCCACCAC CCTGTGGCGC
CTGACCCAAG CCCGCGACTA CGGCGAACAA GCCGTCGCCT ACTTCCGCGC CAACCCCGAC
CCCCACCGCC TGGGACTGGC CCTGACGAAC CTGGCCGAAG TCGCCAAACG CCAACGCCAC
CCGGAAGAAG CCCTCACCCT CGCCACCGAA GCCCTCACCC ACTTCGAGCA AAGCAACTAC
GAAACCGGAC GCAGCGCGGC CCTCATCGTG ATCGCCGACG CCGAACGCAC CACCCACCAC
CCCCACCAAG CCCTGGACCA CTACCTAGCG GCACTCCACA CCGCCGAGGA ACAGCAATAC
TTCGACAGCA CCACCCGCGC CCTCCAAGGC CTCGCCATCA CCCACCGCGA CCTGGCCGAC
CCCACCCAAG CCCTGCACTA CCACGACCGC CTCGAAAAAC TCCTCACCGA AGCCGACCCC
ACCCACCCCG ACCTCCCCGA ATCCCTCAAC GAACGCGCCC ACACCGAACT CACCGCCCAC
CACCCGAAGC ACGCCCAAGC CACCGCCGAA CGCGCCCTCA CCCTCGCCCA GGAGGCACCC
AACCCCTACG AGGAGGCCCG GGCGTCGACC CTCCTCGCGA ATCTCGCGAC ACTGCACGGC
GACCCAGCCC GGGCGCAGGA GCTGAACCGG CGCGCGGAGG AGATCTGGGC GGCGCTCGGG
ATCGCGGCTT GGGATGGAGT GGCGGCCTCA GAGGGCTGA
|
|---|
| Protein sequence | MDEAESAPRD PRALLAAELL AVQEATGLSL KELERVTHVS DSSLSRYLAG RSVPPWTVVQ
AMSRLARRDP DGLRTAWAAA RGARLNVPRG VAGISGGVAG GVGGVGGATG LGRDDLPRAP
LGFVGRRPEL ATLVTTPGVW VVDGMAGVGK STLAVRAARA LAEAERRRTL YLHLHGHTSH
RAPLAPEAAL TALLSAIGVP DKRIPEDPDL RAALWRGEAA RRTPVVVLDD AVDSAQVRPL
LPGAADAVVL VTSRRRLVSL EGARSLTLAV PSLPECRELV DVIAGPERRA AEPEAVDAII
EACGRLPLAV QLCAARLRHR PAWSAAFLAE RLRDEERRRR ELAADGGGVG AALALSVAHL
RETERAGFAL LGSLPGLDFD VYAAAALIDA HPADAEDLLQ TLVDAHLLDE SAAGRYRLHD
LTRDHARAMA DPARAAAERR LVDYHIAAAA AASTAFDPYG SARIGLIQPG LPDDRLPDFA
DAAEGGAWFE EHLPTLIHLS GTALDARSLA LLRNSVCFLW TSGQPAAMTA LGHLARTGTR
SPGAEEDHAW AARMLGIASL IAGRPEEAIE HFETALIGAG ETLRATLIGA LSITATTLWR
LTQARDYGEQ AVAYFRANPD PHRLGLALTN LAEVAKRQRH PEEALTLATE ALTHFEQSNY
ETGRSAALIV IADAERTTHH PHQALDHYLA ALHTAEEQQY FDSTTRALQG LAITHRDLAD
PTQALHYHDR LEKLLTEADP THPDLPESLN ERAHTELTAH HPKHAQATAE RALTLAQEAP
NPYEEARAST LLANLATLHG DPARAQELNR RAEEIWAALG IAAWDGVAAS EG
|
|---|
| |