| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0979 |
|---|
| Symbol | |
|---|
| ID | 8332313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1117976 |
|---|
| End bp | 1118815 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644954131 |
|---|
| Product | transcriptional regulator, AraC family |
|---|
| Protein accession | YP_003111751 |
|---|
| Protein GI | 256390187 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.560002 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0613388 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGCG TGCGTCGCGA GCCTGTTCCC GTTCTGCGCG GCCTCGTCTA CCGCCACACC
GGTTTCCATC TGCCGGACGC CGCCGAGCGC GCGCGGCTGG AACTCCCGTC CGGCGCCGCC
ACGATGCTGA TCGCCTTCGC CGAGCCGATC CGGATCGGCC TGGTCTCCGA GGGGGAGTCC
GAGGTCTTCC AGCGGACGTC CTTTTTGTCC GCCGGCCGCG CCATCGCGGC GATCGGACGG
CATCGCGGCC GCGTCCACGG CATGGAGCTG ACCCTGAGCC ACACCGGCGC GCACCACATC
CTCGGCGTGC GCATGGCCGA ATTGGCTGAG GGCTTCCCGA CGCTCGGCGA AGTGCTGGGC
CGCGAAGGTG AATTGCTCGT CGAGCAATTG GCGAGCCTGC CGTCCTGGGA GGCGCGCTTC
GCGACGCTCG ACGCGTACCT GGCGCGCCGC GCCGCCGACT CCCAGGTCCA AGCCTCCTGG
CAGGTGACGC GCGCGACTCG TCTGGTCGCC GCCGGCTGGT CGCTCCGCGA CATCCAGCGA
GACGTCGGCT GGGGCGAGCG GCATCTGCGC TCGCGGTTCC TGGACCAGGT CGGGATGACG
CCGAAGGCGA TGGCGCGGGT CCTGCGGCTG CAAACCGCGC TGCGCGCCTA TCTGTCCGGA
CGCAATTGGG CGCAGGCCGC GGTCCTGGCG CGCTACCACG ACCAGGCGCA CCTCGGGCAC
GACGTGAAGG CGATCACCGG GCTGACGCCG GGGCGGCTGG CGGAGCTGCG GCGCGGCGCC
CCTCCGGGCT CCGCACTCGA CCGGCTCCCC GGACGGGTGA CCAGTGTGCT GATGGGCTGA
|
|---|
| Protein sequence | MESVRREPVP VLRGLVYRHT GFHLPDAAER ARLELPSGAA TMLIAFAEPI RIGLVSEGES
EVFQRTSFLS AGRAIAAIGR HRGRVHGMEL TLSHTGAHHI LGVRMAELAE GFPTLGEVLG
REGELLVEQL ASLPSWEARF ATLDAYLARR AADSQVQASW QVTRATRLVA AGWSLRDIQR
DVGWGERHLR SRFLDQVGMT PKAMARVLRL QTALRAYLSG RNWAQAAVLA RYHDQAHLGH
DVKAITGLTP GRLAELRRGA PPGSALDRLP GRVTSVLMG
|
|---|
| |