| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0906 |
|---|
| Symbol | |
|---|
| ID | 8332239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1054151 |
|---|
| End bp | 1055683 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644954058 |
|---|
| Product | drug resistance transporter, EmrB/QacA subfamily |
|---|
| Protein accession | YP_003111679 |
|---|
| Protein GI | 256390115 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.431531 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.0779201 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCG ACACCATCGG CCGCCCGGGA GGCGGCGCGG CGGACGGCCT GCGCGCCGCC
ACCATCGGCC ACCCGGTCCG CACCTTCGTC ATCACCGCCG CCGCCATGTT CATGGCGCAG
CTGGACAACC TCGTCGTCAG CATCGCGCTG CCCTCGATCC GGGAGTCGCT GCACGCCGGC
CTGTCGGGCC TGCAGTGGAC GGTCTCGGCC TACACGCTCA CCTTCGCCGT CTTCCTGCTG
ACCGGCTCCG CGCTCGGCGA CCGCTTCGGC CGCCGGAACC TGTTCGTCGC CGGGCTCGCG
GTCTTCACCG CGGCGTCGGT GGCCTCGGCG CTGGCGCCGA ACATCGCGGT GCTGATCGCC
GCGCGTACCG TGCAGGGGCT GGGCGGTGCG GTGATCGTGC CCCTGAGCCT GACGCTGCTG
TCGGCGAGTG TGCGCCCTGA GAAGCGCGGT GCGGCTGTCG GGGCGTGGGG TGCCATCGGC
GGGCTCGCCG TGGCGCTGGG ACCGGTGATC GGCGGTGCCG TGGTGGAAGC CGCCTCCTGG
CAGTGGATCT TCTGGGTGAA CGTGCCGCTG GGCATCGTGC TGCTGCCGCT GGCGTGGTGG
GGTCTGACCG AGAGCCGCGG TCCGGTGCGC CGGCTGGACA TCCCCGGGAC CGTGCTGGCC
ACCGGCGGGC TGCTGGGCGT GGTGCTGGGC CTGATCCGCG GCGGCGACGC CGGCTGGACC
ACCCCGCTGG TGCTGACCGG CTTCGTCGCC GGCGCCGTGC TGCTGGCCGC CTTCGTGGTC
TGGGAACTGC GGACCGACGC GCCAATGGTG CCGATGCACC TGTTCCGCGG CCGGAGCTTC
CCGCTGGTGA ACCTCAGCGC CCTGCTGATG TCCTTCGGGA TGTTCGGCGC GGTCTTCTTC
CTCTCGCAGG TCTTCCAGAC CGTCTTCGGC GACTCGCCGC TGGCCTCCGG GATCCGGGTG
CTGCCCTGGA CCGGCATGCC GATGCTGGTG GCGCCGATCG CCGGGATCCT GTCCGACCGG
ATCGGCGGCA AGTGGATCGT CACCGCGGGC CTGGGCCTGC AGGCGGTCGC GCTGGGCTGG
ATCGCCTCGG CCATCTCGGC CTCGGTGAGC TACACCGCGC TGCTGCCGGC CTTCGTCATC
GGCGGTACCG GCATGGCGAT GTTCTTCGCC CCGATCGCGA ACCTGGTCCT GGGCTCGGTG
AGCCGCGAGC AGGAAGGCAT CGCCTCGGGC GTCAACAACG CGCTGCGGGA GTTCGGCGGC
GTGCTGGGCA TCGCGGTGAT GGGCGCGGTG TTCTCCGCCA ACGGCGGCTA CGGCCCGACC
GCGACCCGGA CCGCGCCGCA GCACTTCATC GACGGTCTGA TTCCCGCCGT CTTCACCGGC
GCGGCGGTCC TGGTGGTGGC CACGCTGGCG ATGTGGCTGG TTCCCGGGCG CCGACCGGCG
GTCGCCGCCG CACAGGCTGG GGACGACGCC GACGCGCAGC AGGAGCAGGA CGTCGAAGGA
CCTCGGCACG AGGAGATCGG CGCGTCGGCA TAG
|
|---|
| Protein sequence | MSTDTIGRPG GGAADGLRAA TIGHPVRTFV ITAAAMFMAQ LDNLVVSIAL PSIRESLHAG
LSGLQWTVSA YTLTFAVFLL TGSALGDRFG RRNLFVAGLA VFTAASVASA LAPNIAVLIA
ARTVQGLGGA VIVPLSLTLL SASVRPEKRG AAVGAWGAIG GLAVALGPVI GGAVVEAASW
QWIFWVNVPL GIVLLPLAWW GLTESRGPVR RLDIPGTVLA TGGLLGVVLG LIRGGDAGWT
TPLVLTGFVA GAVLLAAFVV WELRTDAPMV PMHLFRGRSF PLVNLSALLM SFGMFGAVFF
LSQVFQTVFG DSPLASGIRV LPWTGMPMLV APIAGILSDR IGGKWIVTAG LGLQAVALGW
IASAISASVS YTALLPAFVI GGTGMAMFFA PIANLVLGSV SREQEGIASG VNNALREFGG
VLGIAVMGAV FSANGGYGPT ATRTAPQHFI DGLIPAVFTG AAVLVVATLA MWLVPGRRPA
VAAAQAGDDA DAQQEQDVEG PRHEEIGASA
|
|---|
| |