Gene Caci_0906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0906 
Symbol 
ID8332239 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp1054151 
End bp1055683 
Gene Length1533 bp 
Protein Length510 aa 
Translation table11 
GC content73% 
IMG OID644954058 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_003111679 
Protein GI256390115 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.431531 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.0779201 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCG ACACCATCGG CCGCCCGGGA GGCGGCGCGG CGGACGGCCT GCGCGCCGCC 
ACCATCGGCC ACCCGGTCCG CACCTTCGTC ATCACCGCCG CCGCCATGTT CATGGCGCAG
CTGGACAACC TCGTCGTCAG CATCGCGCTG CCCTCGATCC GGGAGTCGCT GCACGCCGGC
CTGTCGGGCC TGCAGTGGAC GGTCTCGGCC TACACGCTCA CCTTCGCCGT CTTCCTGCTG
ACCGGCTCCG CGCTCGGCGA CCGCTTCGGC CGCCGGAACC TGTTCGTCGC CGGGCTCGCG
GTCTTCACCG CGGCGTCGGT GGCCTCGGCG CTGGCGCCGA ACATCGCGGT GCTGATCGCC
GCGCGTACCG TGCAGGGGCT GGGCGGTGCG GTGATCGTGC CCCTGAGCCT GACGCTGCTG
TCGGCGAGTG TGCGCCCTGA GAAGCGCGGT GCGGCTGTCG GGGCGTGGGG TGCCATCGGC
GGGCTCGCCG TGGCGCTGGG ACCGGTGATC GGCGGTGCCG TGGTGGAAGC CGCCTCCTGG
CAGTGGATCT TCTGGGTGAA CGTGCCGCTG GGCATCGTGC TGCTGCCGCT GGCGTGGTGG
GGTCTGACCG AGAGCCGCGG TCCGGTGCGC CGGCTGGACA TCCCCGGGAC CGTGCTGGCC
ACCGGCGGGC TGCTGGGCGT GGTGCTGGGC CTGATCCGCG GCGGCGACGC CGGCTGGACC
ACCCCGCTGG TGCTGACCGG CTTCGTCGCC GGCGCCGTGC TGCTGGCCGC CTTCGTGGTC
TGGGAACTGC GGACCGACGC GCCAATGGTG CCGATGCACC TGTTCCGCGG CCGGAGCTTC
CCGCTGGTGA ACCTCAGCGC CCTGCTGATG TCCTTCGGGA TGTTCGGCGC GGTCTTCTTC
CTCTCGCAGG TCTTCCAGAC CGTCTTCGGC GACTCGCCGC TGGCCTCCGG GATCCGGGTG
CTGCCCTGGA CCGGCATGCC GATGCTGGTG GCGCCGATCG CCGGGATCCT GTCCGACCGG
ATCGGCGGCA AGTGGATCGT CACCGCGGGC CTGGGCCTGC AGGCGGTCGC GCTGGGCTGG
ATCGCCTCGG CCATCTCGGC CTCGGTGAGC TACACCGCGC TGCTGCCGGC CTTCGTCATC
GGCGGTACCG GCATGGCGAT GTTCTTCGCC CCGATCGCGA ACCTGGTCCT GGGCTCGGTG
AGCCGCGAGC AGGAAGGCAT CGCCTCGGGC GTCAACAACG CGCTGCGGGA GTTCGGCGGC
GTGCTGGGCA TCGCGGTGAT GGGCGCGGTG TTCTCCGCCA ACGGCGGCTA CGGCCCGACC
GCGACCCGGA CCGCGCCGCA GCACTTCATC GACGGTCTGA TTCCCGCCGT CTTCACCGGC
GCGGCGGTCC TGGTGGTGGC CACGCTGGCG ATGTGGCTGG TTCCCGGGCG CCGACCGGCG
GTCGCCGCCG CACAGGCTGG GGACGACGCC GACGCGCAGC AGGAGCAGGA CGTCGAAGGA
CCTCGGCACG AGGAGATCGG CGCGTCGGCA TAG
 
Protein sequence
MSTDTIGRPG GGAADGLRAA TIGHPVRTFV ITAAAMFMAQ LDNLVVSIAL PSIRESLHAG 
LSGLQWTVSA YTLTFAVFLL TGSALGDRFG RRNLFVAGLA VFTAASVASA LAPNIAVLIA
ARTVQGLGGA VIVPLSLTLL SASVRPEKRG AAVGAWGAIG GLAVALGPVI GGAVVEAASW
QWIFWVNVPL GIVLLPLAWW GLTESRGPVR RLDIPGTVLA TGGLLGVVLG LIRGGDAGWT
TPLVLTGFVA GAVLLAAFVV WELRTDAPMV PMHLFRGRSF PLVNLSALLM SFGMFGAVFF
LSQVFQTVFG DSPLASGIRV LPWTGMPMLV APIAGILSDR IGGKWIVTAG LGLQAVALGW
IASAISASVS YTALLPAFVI GGTGMAMFFA PIANLVLGSV SREQEGIASG VNNALREFGG
VLGIAVMGAV FSANGGYGPT ATRTAPQHFI DGLIPAVFTG AAVLVVATLA MWLVPGRRPA
VAAAQAGDDA DAQQEQDVEG PRHEEIGASA