| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0905 |
|---|
| Symbol | |
|---|
| ID | 8332238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 1053231 |
|---|
| End bp | 1053992 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644954057 |
|---|
| Product | transcriptional regulator, TetR family |
|---|
| Protein accession | YP_003111678 |
|---|
| Protein GI | 256390114 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.938127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.145255 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGGTT TCTCCGGCTC CGGCGACGGG CGTCCCGGCT CGCGGCGCCA GGGGTTGCGC
CTCTGGTTAG TGACTGCTAA CTTACTTCTC ATGAGCCCCC GCATGAGTGC CGACGAACGA
CGCGACCAGG TCGTCCGTGC CGCTGTCGCC GAGTTCGCCG TACGCGGTCT GGAGGGCACC
TCGACCGGGG ACATCGCCAA GCGGGTCGGG GTGTCGCAGC CCTACCTGTT CCGGCTGTTC
CCGACCAAGC GCGACCTGTT CATCGCCGCT GTGAACCACG GAGCCACGCA GGTGCGCGAC
GTGTTCACCA AGGCGGCCGA GGGCAAGTAC GGCCACGCGG CGCTCGCCGC GATGGGCGAG
GCCTACCAGG ACCTGCTCCT GGCGGACCGG CAAGTGCTGA ACATGCAGCT CCAGCAGTTC
GCCGCCTGCC ACGACCCGGA CGTCCAGGCC GCCGTGCGCG ATGCGATGCA GACCCTGTGG
CAGCACATGG AGAACCTCTC GGGCGCCCCG GTCGGGGTCC GCGTGGACTT CCTGGCCAAG
GGCATGCTCT GCAACGTGCT CGCCGCGATG GGGCGGGACA GCGGTGAGGA CCCGGCGTGG
CAGCCGATCC TCAACGTCCT GCGTGACGAC ACCACCGAGA CCGCCGACAC GGCCGAGGCG
CTCGACGCCG AAGCCGCGAA GGCCGGCTCC GCGGAGGCTC GACCGGGCAG TCCGGCAGAG
CCCGGATACG CCTCCTACGT CGAGAAGGCC TTCACCACCT GA
|
|---|
| Protein sequence | MRGFSGSGDG RPGSRRQGLR LWLVTANLLL MSPRMSADER RDQVVRAAVA EFAVRGLEGT
STGDIAKRVG VSQPYLFRLF PTKRDLFIAA VNHGATQVRD VFTKAAEGKY GHAALAAMGE
AYQDLLLADR QVLNMQLQQF AACHDPDVQA AVRDAMQTLW QHMENLSGAP VGVRVDFLAK
GMLCNVLAAM GRDSGEDPAW QPILNVLRDD TTETADTAEA LDAEAAKAGS AEARPGSPAE
PGYASYVEKA FTT
|
|---|
| |