| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0875 |
|---|
| Symbol | |
|---|
| ID | 8332206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 1016890 |
|---|
| End bp | 1018407 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644954026 |
|---|
| Product | AAA ATPase central domain protein |
|---|
| Protein accession | YP_003111649 |
|---|
| Protein GI | 256390085 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1222] ATP-dependent 26S proteasome regulatory subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.269811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.497399 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGTCA CATCTGTGCA CGGTGGCCGC TCCCCGGTCC CCGTCCCCGG CGCGAACGCC
GACGCCGCCT CCGATCCGAA CGCCGCGAGC CCGAACGCCG CGCCCGACCC GAACGCACCC
ACCTCACCGG CACCCCCCGC CGCGCCCAGC CTCGCCGACC TGCTCACCGC GCACCTCGGC
CCGGAAGCCG CCCTGCTCCC CGTCACCACC GCGACCTGGC CGCCCTACGA GCACGTCAAC
GTCCAGGGCG CCCTGGACCG CTGGCTGTCC CGCAACGGCG CCCCGTACCG CCTGACCGGC
ATGGCCGGCT TCCGCCACCG CATGTTCGGC CTGTCAGACC TCTTCTACGA GTCCGGGCCG
CAGGGCATGG CCGTCAGCGG CGTGTCCCTC ACCGACCAGC CCTCCGGTCC CGGCGACCAG
ACCCGCACCT GCGTCCAGTG CGGCCTGTAT CTCGTGGACG GCCTCGACGG TCCCGACGAC
GGCGACCGCA CCGAGGACCC GCGCCCGCCG CTGGCCATCC TGCTCCGCGG CACGGAAATG
CGCGGCCCGC AGCAGGACGT CAGCCTGGAG ATCGCTTGCG CCGACCGCGC CCTGGCCCGC
AAGGCAGCCG CCGAGATCCG CCGCCTGGCC ATCGAGTTCA GCGTCTACCG CGGCCACGTC
CTGGAATTCG GCACCGAGAT GTTCGGCCCG CACCAGTCCG CCCTGGGCTT CCACGACCGC
CCGGTCATGG ACCGCGAGGA GCTGATCCTC CCGCCCGGCA TGCTGGAGGG CATCGAGGCG
CAGATCCTCG GCGTGAACCG CCACCGCGAA ACCCTCCTCG CCCACGGCCA GCACCTCAAG
CGCGGCGTCC TGCTCTTCGG CCCGCCCGGT ACCGGCAAGA CCCACACCGT CAGATACCTG
ATGAGCCGGC TGCCCGAGAC CACCGTCGTC GTCCTCACCG CCAGCGCCCT GCGCCTGATC
GGCCAAGCCT GCGAGATCGC CCGCGCCCTC CAGCCCGCCC TGGTCGTCGT CGAGGACGTG
GACCTGATCG CCCAAGACCG CTCAGCCCAC ATGACCGCCA CCCCGCTCCT GTTCCAACTC
CTCAACGAGA TGGACGGCCT CGACGGCGAC GCCGACGTCA CCTTCCTCCT CACCACCAAC
CGCATAGACA CCCTGGAACC AGCCCTGGCC ATGCGCCCCG GCCGCGTAGA CCACGCCGTC
GAAGTACCAC TCCCAGACGC CGAAGGCCGC GCACGCCTCC TCGAGCTCTA CCGCGGCAGC
CTGGATCTGG ACCTCAGCAG CGCCGACACC CTGATCGAGC GAACAGCAGG CGTCACGGCA
TCCTTCATCA AGGAACTGAT CCGCCGAGCC GCACTGATCT CCCTCAACGA ACAAGACACC
CAAGACACCG CCCCCACCCC CGCCAACGGA CTCCACGTCA GCGCCAAACA CCTGGACGCA
GCCCTGGAAA TCCTCGGCGG CTCCCAGCAC CAACTGACCC GCAGACTCCT CGGCGCATCA
GGCGACCTCC GCCACTGA
|
|---|
| Protein sequence | MVVTSVHGGR SPVPVPGANA DAASDPNAAS PNAAPDPNAP TSPAPPAAPS LADLLTAHLG
PEAALLPVTT ATWPPYEHVN VQGALDRWLS RNGAPYRLTG MAGFRHRMFG LSDLFYESGP
QGMAVSGVSL TDQPSGPGDQ TRTCVQCGLY LVDGLDGPDD GDRTEDPRPP LAILLRGTEM
RGPQQDVSLE IACADRALAR KAAAEIRRLA IEFSVYRGHV LEFGTEMFGP HQSALGFHDR
PVMDREELIL PPGMLEGIEA QILGVNRHRE TLLAHGQHLK RGVLLFGPPG TGKTHTVRYL
MSRLPETTVV VLTASALRLI GQACEIARAL QPALVVVEDV DLIAQDRSAH MTATPLLFQL
LNEMDGLDGD ADVTFLLTTN RIDTLEPALA MRPGRVDHAV EVPLPDAEGR ARLLELYRGS
LDLDLSSADT LIERTAGVTA SFIKELIRRA ALISLNEQDT QDTAPTPANG LHVSAKHLDA
ALEILGGSQH QLTRRLLGAS GDLRH
|
|---|
| |