Gene Caci_0872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0872 
Symbol 
ID8332202 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand+ 
Start bp1012651 
End bp1013289 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content74% 
IMG OID644954022 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003111646 
Protein GI256390082 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.83423 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.281851 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCACCCAG GGAGAACGCC ACAGGTCGGA GGCCGCTCAG CGGGCCAGGG GCGGGCCCGT 
GACAGCACCA TCGACGCCCG CATCCTCGCA GCGGCCAAGC GCCAGCTCGC GGTGCTCGGC 
TACGAAGGGA TGTCGATCGC GGCGGTCGCA GCCGAGGCCG GCACCACCCG GCAGGCCCTC 
TACCGCCGCT GGCCCAGCAA AGCCGACCTG GCCGGCGCCG CCGTCGCGAG CGCCGAGGAC 
GCGCCGACGG ACCCGCCGCG CGAGTCCCCG GGCATCGCCG ACCCCTTCGC CGACCTGGTC 
GCCGAACTCA CCGACTTCCA GCGCGGCGTC TCACGCCCGG GTCGTCTGTC CCTGGTCGGC 
ACGATGCTCC AGGACAACAC CGAGCGCCAG GTCCGCGAAC GCTACCAAGC CCGCGTCATC 
CATCCGCGAC GCCGCCGGAT CGCCGCCATC CTGCAAGCCG CCCAAGACCT CGGCCTGATC 
GACCAGGACG CAGACCTCAC GGTCGCTGTA ACGATGTGTA CCGGCAGCTG GTACGGCCGC 
GCCCTGGCCG GCGACCCGGT CCCCGCGGAC TGGCCGACGC GCACCGCCGC GCTCGTGTGG 
CGTGCCGTCG GCGGGGATGT CCGCAGAACA GGGCACTGA
 
Protein sequence
MHPGRTPQVG GRSAGQGRAR DSTIDARILA AAKRQLAVLG YEGMSIAAVA AEAGTTRQAL 
YRRWPSKADL AGAAVASAED APTDPPRESP GIADPFADLV AELTDFQRGV SRPGRLSLVG 
TMLQDNTERQ VRERYQARVI HPRRRRIAAI LQAAQDLGLI DQDADLTVAV TMCTGSWYGR 
ALAGDPVPAD WPTRTAALVW RAVGGDVRRT GH