| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0254 |
|---|
| Symbol | |
|---|
| ID | 8331581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 286093 |
|---|
| End bp | 287646 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644953421 |
|---|
| Product | histidine ammonia-lyase |
|---|
| Protein accession | YP_003111048 |
|---|
| Protein GI | 256389484 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2986] Histidine ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.225314 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGG TAGTGGTGAT CGGTGAGGCG GATCTCACTT TCGGTGACGT TGTCGCCGTG
GCCCGGGACG GTGCCCGCGT CGAATTGTCC GCGACGTCGC TGAAGGCGCT GGCCGAGGGG
CGCGCCGTGG TGGACCGGCT GGCCGCCGCG CCGACCCCGG CCTACGGCAT CTCCACCGGC
TTCGGCGCGC TGGCCACCCG GCACATCGAT CCGGAGATGC GCGCGCAGCT GCAGCGCTCC
CTGATCCGCT CGCACGCCGC CGGCATGGGC CCGCTGGTCG AGCCCGAGGT GATCCGCGCG
CTCACCCTCA TGCGGCTGAA GACGCTGGCC ACCGGGCACA CCGGCGTGCG CCCCGTGGTC
GCCGAGACCA TGGCCGCGCT GCTGAACTCC GGCGTCACCC CGGCCGTGCG CGAGTACGGC
TCGCTGGGCT GTTCCGGCGA CCTGGCGCCG CTGTCGCACG TCGCCCTGGT GCTCATGGGC
GAGGGCGAGG TTGTCGGGGC GGACGGGGTT TCTGCGGTCG CCGCAGGACC GGTCCTGGCC
GAGCACGGCA TCGAGCCGCT GGAGCTGGCG CCCAAGGAGG GCCTGGCGCT GATCAACGGC
ACCGACGGCA TGCTCGGCAT GCTGATCCTG GCTCTTGGCG ACCTGACCGA GCTGGTGAAG
GTCGCGGACA TCTCCGCGGC GATGTCGGTC GAGGCGCTGC TGGGCACGGA CAAGGTGTTC
CGCCCCGAAC TGCAGGCCAT CCGCCCGCAT CCGGGTCAGG CCGCTTCCGC CGCGAACCTG
GTGAAGGTGC TCGACGGCTC GCCGATCATG GAGTCGCACC GCGAGCCCAA CGAGTGCACC
CGCGTCCAGG ACGCCTACTC GCTGCGCTGC GCCCCGCAGG TCGCCGGCGC CACGCGGGAC
ACCATGGCGC ACGCCGCGAC GGTCGCCGAG CGCGAACTCG CCTCGATCGT CGACAACCCG
GTGGTGCTGC TGGCCGACGG CCGCGTGGAG TCCAACGGCA ACTTCCACGG CGCCCCGGTC
GCGATGGTCC TGGACTTCCT CGCCATCGCC GCCGCCGACC TCGGCTCCAT CGCCGAGCGC
CGCACCGACC GCATGCTCGA CGTCGCGCGC TCGCACGGCC TGCCGCCGTT CCTCGCCGAC
GACCCGGGCG TCGACAGCGG CCTGATGATC GCGCAGTACA CGCAGGCCGC TTTGGTCAGC
GAGAACAAGC GGCTGGCGGT CCCGGCGTCG GTGGACTCGA TCCCGTCCTC GGCGATGCAG
GAGGACCACG TCTCCATGGG CTGGTCGGCG GCGCGCAAGC TGCGCACCGC CGTGGACAAC
CTGCGGCGCA TCCTGGCCGT CGAGCTGGTC GCCGCCGCGC GGGCGCTGGA ACTGCGCGCG
CCGCTGCAGC CCGCCGCCGG GACCGGCGCG GCTGTCAGGG CCCTGCGGGA GGCCGGCGTC
GGCGGCCCGG GCCCGGACCG CTTCCTGTCG CCGGAGCTGC GCGCCGCCGA GGACGCGCTG
AAGTCCGGCG CGGTGGTCGC GGCCGTCGAG ACGGCCGTGG GTCCGCTGAA CTGA
|
|---|
| Protein sequence | MSQVVVIGEA DLTFGDVVAV ARDGARVELS ATSLKALAEG RAVVDRLAAA PTPAYGISTG
FGALATRHID PEMRAQLQRS LIRSHAAGMG PLVEPEVIRA LTLMRLKTLA TGHTGVRPVV
AETMAALLNS GVTPAVREYG SLGCSGDLAP LSHVALVLMG EGEVVGADGV SAVAAGPVLA
EHGIEPLELA PKEGLALING TDGMLGMLIL ALGDLTELVK VADISAAMSV EALLGTDKVF
RPELQAIRPH PGQAASAANL VKVLDGSPIM ESHREPNECT RVQDAYSLRC APQVAGATRD
TMAHAATVAE RELASIVDNP VVLLADGRVE SNGNFHGAPV AMVLDFLAIA AADLGSIAER
RTDRMLDVAR SHGLPPFLAD DPGVDSGLMI AQYTQAALVS ENKRLAVPAS VDSIPSSAMQ
EDHVSMGWSA ARKLRTAVDN LRRILAVELV AAARALELRA PLQPAAGTGA AVRALREAGV
GGPGPDRFLS PELRAAEDAL KSGAVVAAVE TAVGPLN
|
|---|
| |