| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0228 |
|---|
| Symbol | |
|---|
| ID | 8331554 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 252889 |
|---|
| End bp | 255201 |
|---|
| Gene Length | 2313 bp |
|---|
| Protein Length | 770 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644953394 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_003111022 |
|---|
| Protein GI | 256389458 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00256597 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.277855 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCCCG AATGGGACAG GTACGCCCAA CGTCTCAAAG CCTTGCGGAG CGAACAGGGG
CTGAGCCAGC GGCGTCTGGC GCGGGCTCTA CATGTGGACC ATAGCGTGAT CTCGCGTGCG
GAGAGTGCCG TCCGTCGTCC CGATCCCGAC CTCGCGGCCT CGATCGACCT GCTGCTGAGC
ACGGGTGGCG AGTTGCAGCG GTTGGCTCGG GACGCGGTGC GAAAGCAGGC GTCGGCCGAC
TCACTATCGA CGCGTGGGGG TCCTTCTGGT GCGGTCCCGC GGTTGCGATC GTCTATACCG
CCCGACTCCG TGCACTTCAC TGGTAGGAAC GCGGAGTTTG ACCAGGTGCG ATCAGAGCTC
GTCGAACGGC CCGACGCGGT CGGCGCCGCG AGCGTCTGCG TGATCAGCGC GCTGGCCGGT
GTGGGCAAGA CAGCGCTCGC CATCCACAGC GCGCACCGCC TCGCCGGCCG TTTTCCGGAC
GGATGTCTGT TCCTCGATCT GCGTGGCTTC ACTCCCGGAC ACGCGCCGCT GAGCAGCTTC
GAGGCGCTGG GAGCTCTGCT CGCCTTGCTG GATGTCCCGG TCGCCACCAT CCACAGCACC
GAGCCGGCGC GCTCGGCGCA GTTCCAGGCG GAGACCGCCG GCGCGCGGCT GCTGCTGGTG
CTAGACAACG CCGCTGACGC ACATCAGGTA CGACTGCTCT TGCCATCGGC GCCTGGCTGC
CGGGTATTGG TGACGAGCCG GAACCGCCTT GTGGCCCTTG ACGAGGCCGT GCATCTCGAC
CTGCGGCCCC TTGCCGAGGT TGATGCCGCC GCGCTGTTCC GCATGGTGTC GGCCGGCGGT
CGTGTCTCGC AGAGCACTGT CGACGGTATC GTCGCGCGCT GTGCCGGCGT CCCATTGGCG
TTGCGGATCG CGGCGGCACG CTGCGCTCCC GGCGGCGCGT TCGATCCGGA ACTGCTCGCC
GCCGAGCTGT CGCGCGCGGA GGACTTCATC GGGCAGCTGG ACGACGGGGA ACGCAGCGTG
CGTGCGGTGT TCGATGCCTC GTTCTCCTTG CTGCCCCGAG AGCTGCGGCA GGTGCTTGCT
CTGCTCGGCA CCCGTCTGCT GACCGTCTTC GACATTTGGG ACGTCGCAAT GCTCGCCGAC
CTCCCGCTCC TCGGCGCGGC TGGCGCGTTG GAACGGCTGC ACGCGGCGAG TCTGCTTGAA
GTGCGCGGCA CTGATCGTTT CGTCCTGCAC GATCTGGTCG CCGAGTACGC GATATCCGCC
GCCGGACAGA CGCTCGGCGC CGAGCAGCTG CGGGCCGCAA TCGGACGCTT GCTCGACGCC
TATCTGCGCG TCTGTGACAG GGCCGACTCA CAGGTCACGC CGCATCGGCA CCGCTTCCCG
CTCGCGGTGG CGGCAGCCGG AGCTGTGCCA GACCCGGACT TCAGTGACTA CTACGAGGCC
CTCGACTGGC AGACCAAGCA TCTCGACACG GCCGCGGCGC TGTGCGAAAC CGCCTACGAG
CACGGTTTCG ACGAACAGTG CTGGCAACTC GCCTACGCGC TGCGCGGGGT CTTCTTCCTC
ACCAAGCACT GGGAGCAGTG GGATCGTATC CAGCGCATCG CGCTGGCGGC GACAAGACGG
CTCCAAGACC CGCACGCCGA GTGCGTGACT CTGAACAACC TCGGCCTCAT CCTCGGTGAA
CGGGGCGAGA CCGACGCCGC GCACCGCTGC CTCAACGAGG CCGAAAGCGT GTGCCGCGCC
GCCCGTGATC GCTTCGGCGA GAACACCGCA CGCGCCCACA GGGCCTGGCT CTTCCACACG
GCCGGACGGC ATGGCGAGTC CCTGACCGAG CACGAGGGCG TCCTCGAGTT CTACACGCAG
ATCGACAGCC CTCGCAATGT GGCCATCGTG ATGCGCGACA TGGCCGCATC CGAAGCCGCT
CTAGGCCACA CCGACAGTGC CCTCGCGCAC TTGCACGCGG CCGAGCAGGC CTTTCGCAAA
TTGGATCTGA CGATGGACCT GGCCATGGCC CTGAACGACC TCGGCGAGAC CTACACAGCG
ATCATCGACC CGAAACGCGC CGCCGAGTAC TTCGAAGCAG CGCTGGCAGC CTGCGCGGAG
TCCGGCAGCG ATCATGAACG GGCTCGAGCG CACGCCGGCC TCGGCGCCCT GGCGGAGTCC
GCAGGCCGGC AGAACTGGGC GAACGCACAC TACCTTCAGG CCCTGAGGCT GTTCGATGCG
CTCGGCGCTC CGGCGGCGGA CGTGGTGCGC GCTCGGCTGC ACGCGTCGAC TGTCATGTTC
CCGACCACCG CTGAGGAGGA CGAGAACCGC TGA
|
|---|
| Protein sequence | MRPEWDRYAQ RLKALRSEQG LSQRRLARAL HVDHSVISRA ESAVRRPDPD LAASIDLLLS
TGGELQRLAR DAVRKQASAD SLSTRGGPSG AVPRLRSSIP PDSVHFTGRN AEFDQVRSEL
VERPDAVGAA SVCVISALAG VGKTALAIHS AHRLAGRFPD GCLFLDLRGF TPGHAPLSSF
EALGALLALL DVPVATIHST EPARSAQFQA ETAGARLLLV LDNAADAHQV RLLLPSAPGC
RVLVTSRNRL VALDEAVHLD LRPLAEVDAA ALFRMVSAGG RVSQSTVDGI VARCAGVPLA
LRIAAARCAP GGAFDPELLA AELSRAEDFI GQLDDGERSV RAVFDASFSL LPRELRQVLA
LLGTRLLTVF DIWDVAMLAD LPLLGAAGAL ERLHAASLLE VRGTDRFVLH DLVAEYAISA
AGQTLGAEQL RAAIGRLLDA YLRVCDRADS QVTPHRHRFP LAVAAAGAVP DPDFSDYYEA
LDWQTKHLDT AAALCETAYE HGFDEQCWQL AYALRGVFFL TKHWEQWDRI QRIALAATRR
LQDPHAECVT LNNLGLILGE RGETDAAHRC LNEAESVCRA ARDRFGENTA RAHRAWLFHT
AGRHGESLTE HEGVLEFYTQ IDSPRNVAIV MRDMAASEAA LGHTDSALAH LHAAEQAFRK
LDLTMDLAMA LNDLGETYTA IIDPKRAAEY FEAALAACAE SGSDHERARA HAGLGALAES
AGRQNWANAH YLQALRLFDA LGAPAADVVR ARLHASTVMF PTTAEEDENR
|
|---|
| |