| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0188 |
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| Symbol | |
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| ID | 8331514 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Catenulispora acidiphila DSM 44928 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013131 |
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| Strand | + |
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| Start bp | 201624 |
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| End bp | 205172 |
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| Gene Length | 3549 bp |
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| Protein Length | 1182 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644953356 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003110984 |
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| Protein GI | 256389420 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCCTGT CCGGACTTCT TGACGCCGTA TCCGCCGACC CGGGGGTCGC CGCGCTGCTG
GAAGCGGCCG CGACCGCCGG GCGTACCTCC TTCGACCTGG CCGCGCCCCG CTCGGTCCGG
CCGTTCGCGC TGGCCGCGCT GGCCCGCGCG CAAGGCCCGG CGGGCCGTCC GGTGCTGGCC
GTGACCGCCA CCGGCCGCGA GGCCGAGGAC CTGGTCGCCG CGCTGCGCGG GCTGCTGGAC
CCCGAGACGG TCGTGGACTT CCCGTCCTGG GAGACGCTGC CGCACGAGCG GCTCTCGCCG
CGCAGCGACA CCGTCGGGCG CCGGCTGGCC GTGCTGCGCC GCCTGGTCCA CCCCGACGCC
GCCACCGAGG GCGCCGGCGC CCTGAAGGTG GTCGTGGCGC CGATCCGCTC GGTGCTGCAG
CCACAGGTCA AGGGCCTGGC CGACCTGGTC CCGGTGGCGG CGCGCACCGG CGCGGAGATC
GATCTGGACG ACCTGGTGAA CCGGCTCGCC GCCGCCGCGT ACACCCGGAC GGACCTGGTG
GACAAGCGCG GCGAGTTCGC GGTCCGCGGC GGCATCGTCG ACGTCTTCCC GCCGACCGAG
GAGCACCCGC TGCGGCTGGA GTTCTGGGGC GACCAGATCG AGGAGATCCG CTACTTCAAG
GTCGCCGACC AGCGCTCGCT GGAGGTCGCC GAGCACGGGC TGTGGGCGCC GCCGTGCCGC
GAGCTGCTGC TCACCGACGA GGTCCGCAAG CGGGCCGCGG CGCTGATGGA GGACCACCCG
GAGCTGGCCG ACATCCTCGG GAAGGTCTCC GAGGGCATCG GCGTGGAGGG GATGGAGTCG
CTGGCGCCGG TGCTGGTCGA CGACATGGAG CTCTTGATCG ACCTGCTGCC GGCCGGCTCG
CCGATCGTGC TCTGCGACCC CGAGCGGGTG CGGACCCGCG CCGCCGACCT GGCCGCCACC
TCCGCGGAGT TCCTGGACGC CTCCTGGGCC GCCACCGCCG GCGGCGGGCA GACCCCGATC
GACCTCGGCG CGGCCTCGCT GAAGGACCTC GCCTCGGTCC GCGAGCACGC CATCACCCTG
GGCCTGCCCT GGTGGTCGCT GACGCCCTTC GCCCCGGACC TGGAGCTGCT GCCGGAGGAG
GACGCCACCG AGATCAGCGA GATCCACGAC ACCGAGCAGT ACGGCGGCGA CACCGGCCGC
GCGCTCGCCG ACGTCCGGGC CCGCATCTCC GAGGGCTGGC GGGTGGTGCT GGTCACCCAA
GGCCACGGCT CGGCCGACCG CCTCGTCGAG GTGTTGAAGG GCGCTGACAT CGGCGCGCGC
TACGTCCCGG AGCTGGACAC CGTCCCGGAA CCGGCGCTGG CGACCGTGGC CACCGCCAGC
ATCGAGCACG GCTTCATCGC CGCGGACCTC AAGCTCTGGG TGATCACCGA GCAGGACGTC
TCCGGGCAGC GCACGGCGAC CAAGGACATG TCCCGCATGC CCTCCCGGCG CCGCAACGTC
ATCGACCCGC TGCAGCTCAA GGCCGGGGAC CCGGTCGTGC ACGAGCAGCA CGGCGTGGGC
CGCTACGTGG AGATGGCGCA GCGCACCGTC GCCGGCGCGA CCCGCGAGTA CCTGGTGATC
GAGTACGCCG CGGCCAAGCG CGGCCAGCCC GGCGACCGGC TGTTCGTCCC CACCGACCAG
CTGGACCAGG TCACCAAGTA CGTCGGCGGC GAGGCGCCCT CGCTGCACCG GCTCGGCGGC
GCGGACTGGC AGAAGGCGAA GTCCCGGGCC CGCAAGGCGG TCAAGCAGAT CGCCGGGGAC
CTGGTGAAGC TGTACAGCGC GCGGATGGCC GCGCCGGGGC ACGCCTTCGC CGCGGACACG
CCGTGGCAGC GCGAGCTGGA GGACGCCTTC CCCTACGTGG AGACGCCGGA CCAGCTGGCG
TGCATCGACG AGGTGAAGTC CGACATGGAG AAGCCGGTCC CGATGGACCG GCTGATCTGC
GGCGACGTCG GCTACGGCAA GACCGAGATC GCGGTGCGCG CGGCGTTCAA GGCGGTGCAG
GACGGCAAGC AGGTGGCGGT GCTGGTGCCG ACCACGCTGC TGGTGCAGCA GCACTTCTCG
ACGTTCGCCG AGCGGTACGC GCAGTTCCCG GTGACCCTCA AGGGCCTGTC CCGGTTCCAG
ACCGACAAGG AGGCCGCCGA GGTGCTGCGC GGCGTGGCCG ACGGCTCGGT CGACGTCGTC
ATCGGCACGC ACCGGCTGCT GGCGAACTCG GTGAAGTTCA AGCGCCTCGG CCTGGTGATC
GTCGACGAGG AGCAGCGCTT CGGCGTCGAG CACAAGGAGC AGCTGAAGCA GGCGCGGGCC
AACGTGGACG TGCTGACCAT GTCCGCCACG CCGATCCCGC GCACCCTGGA GATGGCGGTC
ACCGGCATCC GGGAGATGTC CACGATCCAG ACCCCGCCGG AGGAGCGGCA CCCGGTGCTG
ACCTTCGTCG GGCCGTACGA GGAGCGGCAG ATCTCCGCCG CGATCCGCCG CGAGCTGCTG
CGCGAGGGGC AAGCGTTCTA CATCCACAAC CGGGTGGAGT CCATCGACCG CGCGGCCTCG
CGGCTGCGCG CGCTGGTGCC CGAGGCGCGG ATCGCGACCG CGCACGGCCA GATGAACGAG
CATGTGCTGG AGAAGCTGAT CGTCGACTTC TGGAACAAGG AGTACGACGT CCTGGTCTGC
ACCACGATCG TGGAGTCCGG CATCGACATC ACCAATGCCA ACACCCTGAT CGTCGAGCGC
GCCGACAACT TCGGCCTGTC CCAGCTGCAC CAGCTGCGCG GCCGGGTCGG GCGCGGGCGC
GAGCGCGCGT ACTCCTACTT CACCTACCCG CCGGAGAAGC CGCTGACCGA GACCGCGCAC
GAGCGCCTGG CGACCATCGC GCAGCACACC GACCTCGGCG CCGGCATGTA CGTGGCGATG
AAGGACCTGG AGATCCGCGG CGCCGGCAAC CTCCTGGGCG GCGAGCAGTC CGGGCACATC
GAGGGCGTCG GCTTCGACCT CTACATCCGC ATGGTCGGCG AGGCGGTCGA GGAGTACCGC
GCGCAGGCCG AGGGCCGCGA GGTCGAGGAG CAGGTGGAGA TCCGCGTGGA CCTGCCGGTC
GACGCGCACC TGCCGCACGA CTACATCCCG GGCGAGCGGC TGCGGCTGGA GGCGTACAAG
CGCATCGCCG GCGCCACCAC CCACGAGGAG CTCGCCGAGG TCCGCCAGGA GTTCACGGAC
CGCTACGGAC GTTTTCCACA GCCTGTGGAA AACCTCCTCG CGGTCGCGGC GTTCCGCATC
GACGCGCGCG CGGCCGGGCT CACCGAGGTC GCGGTCCAGG GCAACTTCGT GAAGTTCGGC
CCGGTGAAGC TGCGCGAGTC CCAGGAGATG CGGCTGCTGC GCCTGTTCCC GAAGACCCTG
GTGAAGGCGG CCACCGACAC CATGCTGGTC CCCAAGCCGA TGACCGCGCG GATCGGCGGG
CAGCCGCTGC GCGACCAGGA ACTGCTGGGC TGGGCCCGGG ACCTGATCGA CGCGGTGCTG
AAGATGTAG
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| Protein sequence | MSLSGLLDAV SADPGVAALL EAAATAGRTS FDLAAPRSVR PFALAALARA QGPAGRPVLA
VTATGREAED LVAALRGLLD PETVVDFPSW ETLPHERLSP RSDTVGRRLA VLRRLVHPDA
ATEGAGALKV VVAPIRSVLQ PQVKGLADLV PVAARTGAEI DLDDLVNRLA AAAYTRTDLV
DKRGEFAVRG GIVDVFPPTE EHPLRLEFWG DQIEEIRYFK VADQRSLEVA EHGLWAPPCR
ELLLTDEVRK RAAALMEDHP ELADILGKVS EGIGVEGMES LAPVLVDDME LLIDLLPAGS
PIVLCDPERV RTRAADLAAT SAEFLDASWA ATAGGGQTPI DLGAASLKDL ASVREHAITL
GLPWWSLTPF APDLELLPEE DATEISEIHD TEQYGGDTGR ALADVRARIS EGWRVVLVTQ
GHGSADRLVE VLKGADIGAR YVPELDTVPE PALATVATAS IEHGFIAADL KLWVITEQDV
SGQRTATKDM SRMPSRRRNV IDPLQLKAGD PVVHEQHGVG RYVEMAQRTV AGATREYLVI
EYAAAKRGQP GDRLFVPTDQ LDQVTKYVGG EAPSLHRLGG ADWQKAKSRA RKAVKQIAGD
LVKLYSARMA APGHAFAADT PWQRELEDAF PYVETPDQLA CIDEVKSDME KPVPMDRLIC
GDVGYGKTEI AVRAAFKAVQ DGKQVAVLVP TTLLVQQHFS TFAERYAQFP VTLKGLSRFQ
TDKEAAEVLR GVADGSVDVV IGTHRLLANS VKFKRLGLVI VDEEQRFGVE HKEQLKQARA
NVDVLTMSAT PIPRTLEMAV TGIREMSTIQ TPPEERHPVL TFVGPYEERQ ISAAIRRELL
REGQAFYIHN RVESIDRAAS RLRALVPEAR IATAHGQMNE HVLEKLIVDF WNKEYDVLVC
TTIVESGIDI TNANTLIVER ADNFGLSQLH QLRGRVGRGR ERAYSYFTYP PEKPLTETAH
ERLATIAQHT DLGAGMYVAM KDLEIRGAGN LLGGEQSGHI EGVGFDLYIR MVGEAVEEYR
AQAEGREVEE QVEIRVDLPV DAHLPHDYIP GERLRLEAYK RIAGATTHEE LAEVRQEFTD
RYGRFPQPVE NLLAVAAFRI DARAAGLTEV AVQGNFVKFG PVKLRESQEM RLLRLFPKTL
VKAATDTMLV PKPMTARIGG QPLRDQELLG WARDLIDAVL KM
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