Gene Caci_0166 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0166 
Symbol 
ID8331491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand- 
Start bp178394 
End bp179059 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content69% 
IMG OID644953333 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003110962 
Protein GI256389398 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0611363 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGGCA AGGAACGGCG GGAGCAGCTC ATCGAGATCG GCCGGACCCT GTTCGCCGAG 
CGCGGCTTCG ACGCCACCTC GGTGGAGGAG ATCGCGACCA AGGCCGGCGT CTCCAAGCCG 
GTCGTCTACG AGCACTTCGG CGGCAAGGAA GGCCTCTACG CGGTCGTGGT GGACCGCGAG 
ATGGCCAAGC TCCTGTCCAT GGTGACCAGC GGCCTCACCG GCGAACACGC CCGCGAACTC 
CTGGAGCAGG CAGCCTTCGC CCTGCTGGAC TACATCGAGT CCAGCACCGA CGGCTTCCGC 
ATCCTGGTCC GCGACTCCCC GGTCACCACC TCCACCGGCA ACTTCGCCTC CCTGATCTCC 
GACATCGCCT CCCAGGTCGA AGACCTCCTG GGCGTCCACT TCATGCACCG CGGCTACGAC 
CCCAAGCTCG CGCCCATGTA CGCGCAGATG CTCGTCGGCA TGGTCGCCCT CACCGGCCAG 
TGGTGGCTCG ACGTCCGCAA ACCCCCCAAG GCCGAGGTCG CCGCACACCT GGTGAACCTG 
GCCTGGAACG GCTTGTCGCA CTTAGAGGGC CAGCCCCGCC TGATCGTGCA GGAGCAGGCC 
GAGGCGAAGG TCCGGCGGGC GGCGCGGAAG ACGGAGCGCG CCGCGCGGGC TGACGCCAAG 
CGGTAG
 
Protein sequence
MSGKERREQL IEIGRTLFAE RGFDATSVEE IATKAGVSKP VVYEHFGGKE GLYAVVVDRE 
MAKLLSMVTS GLTGEHAREL LEQAAFALLD YIESSTDGFR ILVRDSPVTT STGNFASLIS 
DIASQVEDLL GVHFMHRGYD PKLAPMYAQM LVGMVALTGQ WWLDVRKPPK AEVAAHLVNL 
AWNGLSHLEG QPRLIVQEQA EAKVRRAARK TERAARADAK R