| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_0109 |
|---|
| Symbol | |
|---|
| ID | 8331434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | - |
|---|
| Start bp | 111609 |
|---|
| End bp | 113939 |
|---|
| Gene Length | 2331 bp |
|---|
| Protein Length | 776 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644953276 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_003110905 |
|---|
| Protein GI | 256389341 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.310164 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.141702 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACGTC AGCCGGGGAC CGGGGAACAG CTCCCGCACG CCCGGCCGCA GCCCTCCGCC
GAGCTCGTCC CGGCGAACAG CACCCAGACC TCGGCGATCT CGGTGCTGGA GGCTCTGCCC
GACCCCGTGG TGGTGCTGAA CCACCGGGGA CAGATCACCG GCTGGAACCC CGCCGCCGAG
GAGCTCTTCG GCTGGTACGG GGAAGAGGTG CTGGGCCGGC CGTGGACCGA GTTCGTGGTC
GCCGACGGCA CCAACGGCAA CGCTCTGTCA CACCTGGACT CCATCGGGTC GACCGTCCAG
CGCGGCGGGA CCTGGGAGGG CTCCTTCCCG ATCACCACGC GCAACGGCGA CTCGCTGCTG
GCCCGGGTGC GCGCCGCGCC GATGATGTCC GGCGGCATGA TCACCGGCAC CGTGGTGACC
GCGATCGACC TGTTCGGCTC CGACGCCAGC CGCGACGACC AGCAGCGCGC CGCCGCACGG
GCCGCTGTGC GCGCCGCGGT GCTGTCGCGC GCGGGGATGC AGCTGGGGAC CTCGCTGGAC
ACCGGACGGA CGCTCGCCGC GCTGGCGGAG ATCTTGGTTC CGGCGTTCGC CGACACCTGT
GTCGTGGACC TGCTGGATGA GAACGGCGTC GCGCAGCGCC TGGTGACGGT GCACAGTACG
GACACTGCTC CGTGTCCTCC TATGCGTTCG GGTACGGAGA TCCACTACCC GGCGCGCCAT
CCTTGTGACC GCGCGCTGCG GACCGGACGT CCGGTTCTCA TTCAGGGCGC ACCGCGAGTC
AAGGCGCTGG ACCAGGACGA GGAGTGCGAC CGCAAGTCGC TCCTGCTGGA CGCGAAGTCA
CTGATCGCTG TTCCGCTCCT GGCGCCTAGC GGAGTGCGCG GAGTCCTCGC CATCGCGCTT
ACCGAGGACG CCGACCCGAC GCCCCGGTAC GACACGGCGG ACCTGGAGCT TGTCGAGGAG
CTGGCGGCGC GGGCCGGGCT GGCCCTGGAG AACGCGGCCA TGTTCGACCG GCAGCGGACT
CTGGCGCTGG CGTTGCAGAA GTCGCTCCTG CCGACCGACT TGCCGCTCCC TGACGGCGTC
TCCATCCGCG TGGGCTATGC CCCGGGTGCC GCCTCTGAAG TCAGCGGTGA CTTGTATGAC
GTCGTCGAGC TGTCCGCCGG ACGGATCGGC GTGGTCATCG GGGACGTGCA GGGACGCGGT
GCGCACGCCG CCGCTGTGAT GGGACAGTTG CGCGCCGCCT TGCGTGCCTA CGCAGTGCTG
GATGTGCAGC CCGGACAGTT GCTGTCGTAT CTGGACGAGT TGGTCCGCGG GCTGAACGAG
GAGATCCTCG TCACCTGTGT ATATGCCATC TATGACCCCT TCACCCGGCG CTGCGCTCTA
GCGAACGCCG GACACCCGCC GCCCTTGTTG GCTTCCGCGC ACGGGACTTA TCCGATGGAG
GTCCCGCCGG ACGTCCCGTT GGGCATCGGT CCGCTGGGTC CCGGCGGCGG CAAGGGTGCC
GTGCAGTTCG AGGACCACAT CTTCAGCATC CCTCCTGGGG ACGTACTGGT GATGTACACG
GACGGGGTCG TGGAGCGGCG CGACCAGTCG GTGGACACCG GTGTCCGCAC ACTGTGTCTG
GCCATCGAGC GCGTGGTGCG CGAGCCTCGG GCGATCTGCC GGGCGGCTCT GCGGGCCGCC
GGTAGCGAGG CGCACGACGA CCAGGCTGTG CTCGCCATGG CGACCTCGAC TGTCGACCTC
CCGCTGTCGC GTCTGGCGCT GCCGGCGCGT CCGGAGGCGG CGTTCGCCGC CCGGCACCAC
ACCCGGGCCG TGCTGCGCGA GTGGGGTCTG AGCGAGCACG CGGAGCTGGC CGAGCTGCTG
GTCTCCGAGC TGATCACGAA CGCGGTGCGG CACGCGAGCG GTCCGCGGCC GACTCCGTGG
TCCTTCTCCG ACTCCGACCA GTACTCCGAT CCCGAGCCGC CGCCCATGGC CGAGGACATG
ATGGAGCTGG CGGCCGTCCG GGAGTACGCC GACCACCTCG GCGCCCTGGA CGAGGAGAAC
GAGTTGGACC TGCTCGCCGA GCCCGGCTTG CTGGACGAGC TGGGGATGCT GGACGGCACC
CTGGCCGCGC CCGGCGGTTC GCGGCGGCTG GACCTGGTGC TGCGGCGCGG GCTGCGGGCG
CTGTGGATCG AGGTGCACGA CCCGGACGTG CGGCTGCCCC GCATCCGGCA GGCCGCGGAA
ACAGATGAGG GCGGCCGCGG GTTGTATCTG GTGGACGCGC TGTCGGCGCG GTGGGGCGCG
CGGCCCACCG ATGCGGGCAA GTTCGTCTGG TTCGAGATCC CGCTGTTCTG A
|
|---|
| Protein sequence | MRRQPGTGEQ LPHARPQPSA ELVPANSTQT SAISVLEALP DPVVVLNHRG QITGWNPAAE
ELFGWYGEEV LGRPWTEFVV ADGTNGNALS HLDSIGSTVQ RGGTWEGSFP ITTRNGDSLL
ARVRAAPMMS GGMITGTVVT AIDLFGSDAS RDDQQRAAAR AAVRAAVLSR AGMQLGTSLD
TGRTLAALAE ILVPAFADTC VVDLLDENGV AQRLVTVHST DTAPCPPMRS GTEIHYPARH
PCDRALRTGR PVLIQGAPRV KALDQDEECD RKSLLLDAKS LIAVPLLAPS GVRGVLAIAL
TEDADPTPRY DTADLELVEE LAARAGLALE NAAMFDRQRT LALALQKSLL PTDLPLPDGV
SIRVGYAPGA ASEVSGDLYD VVELSAGRIG VVIGDVQGRG AHAAAVMGQL RAALRAYAVL
DVQPGQLLSY LDELVRGLNE EILVTCVYAI YDPFTRRCAL ANAGHPPPLL ASAHGTYPME
VPPDVPLGIG PLGPGGGKGA VQFEDHIFSI PPGDVLVMYT DGVVERRDQS VDTGVRTLCL
AIERVVREPR AICRAALRAA GSEAHDDQAV LAMATSTVDL PLSRLALPAR PEAAFAARHH
TRAVLREWGL SEHAELAELL VSELITNAVR HASGPRPTPW SFSDSDQYSD PEPPPMAEDM
MELAAVREYA DHLGALDEEN ELDLLAEPGL LDELGMLDGT LAAPGGSRRL DLVLRRGLRA
LWIEVHDPDV RLPRIRQAAE TDEGGRGLYL VDALSARWGA RPTDAGKFVW FEIPLF
|
|---|
| |