| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1906 |
|---|
| Symbol | |
|---|
| ID | 8324002 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1995658 |
|---|
| End bp | 1997154 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644953030 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_003110484 |
|---|
| Protein GI | 256372660 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG ATGAACGTCG AGCGCCCGAC GCTGAGACCG CAGCGCTCTT CGTGCCTCCG
TACGCCTTTG GCGGGGTGGA GCCCGTCGAT GTCGTGCGAC GGCGGAGCGA GGGTCTCGCG
CCCGACACCG TCACCGATCA GCAGGTCCGG GTGGCCGGAC GGATCTTGCG CCTCAGGCGG
CAAGGGAGGA TGGCGTTCGG GGAGCTTCGA GACGCGAGCG GAGCGATCCA GCTCTGGCTG
CGCGCCGATC GCACCCAGGC GTTCTCGACG CTGGCCGATT CCCTGGTGCT CGGCGACTGG
GTCGGCGTCG ACGGTGTGAT CGCGACCACG AGGACCGGCG AGCGCTCCGT CCTCGTTGAT
CGGATCCAGC TTCTTGCGCA TGCGCGCCGA TCGTTCGGCG ACAAGTGGCG GGGTGTGCGC
GATCCCGACG TGCGTTACCG CCAGCGCTAC GTGGATCTGT GGGCCAACCC CGGGGTGCGC
GAGCGCTTCC TCGCCCGCAG CCGACTCGTG CGAGCCCTTC GCGACGAACT CGACGCACGG
GGCTTCGTCG AGGTCGAGAC GCCGATCTTG CAGCCCATTG CCTCGGGCGC GGCCGCTCGA
CCCTTCGTGA CCCACCACAA CGCGCTCGAC ATGGACCTGT ACCTCAGGAT CGCCCCTGAG
CTCTACCTCA AGCGACTTGT GGTCGGCGGG ATCGAGCGTG TGTTCGAACT CGGCCGGGAC
TTCCGGAACG AGGGTATCTC GCCTCGCCAC AACCCCGAGT TCACGATGCT CGAGGCCTAC
CAGGCCTACG GCGACATCGA CGCGATGCGC GAGCTCACGG AAGGGCTGCT CGCGAGCGCA
GCGCGCGCTG TCTTCGGGTC GACCCGCGGC GAGAACGAGC TCGGTGTGAT CGATCTGACC
CCGCCGTTTC GCGCGGCGAC GATGGAGGAT CTCGTCTCGG AGGCGGTCGG CGAGCGGGTC
AGCCTCGACG AGCCCGCACG ACTGCTCGAC CTCGCTCGAC GGTTCGATCT TGCCGTGCTC
GAGCCGGAGG CGGGGCGGGC GTTGGTCGCG CTCTACGAGG AGCTCGTGGA ACCGCGACTC
ATCGAACCGA CGTTCGTACT GGACTTCCCT GAGTCCGTCT CGCCGCTCGC TCGTCGTCAC
CGGTCGCGAC CGGGGCGAGT CGAGCGCTTC GAGCTGGTCG TCGGGGGCCG CGAGCTCGTC
AACGCCTTCA GCGAGCTCAA CGATCCGGAC GAGCAGCGTG CTCGCTTCGA GGAGCAGGCT
CGTCAGCGCC GTGCCGGTGA CGACGAGGCG ATGGCCTACG ACGCGGACTA CGTGCGGGCA
CTCGAGTATG GCCTGCCACC GACGGGTGGT CTCGGCCTCG GTGTGGATCG GCTCGCCATG
CTGCTCACAG GGCAGCGCCA CATCAAGGAG GTCATTCTCT TCCCGACCCT GCGACCGGAG
GCGGGATCCT CGGAGAGCGA TGTCGACGAG GATGGCGCAT CCGACGAGAC GGCGTGA
|
|---|
| Protein sequence | MSADERRAPD AETAALFVPP YAFGGVEPVD VVRRRSEGLA PDTVTDQQVR VAGRILRLRR
QGRMAFGELR DASGAIQLWL RADRTQAFST LADSLVLGDW VGVDGVIATT RTGERSVLVD
RIQLLAHARR SFGDKWRGVR DPDVRYRQRY VDLWANPGVR ERFLARSRLV RALRDELDAR
GFVEVETPIL QPIASGAAAR PFVTHHNALD MDLYLRIAPE LYLKRLVVGG IERVFELGRD
FRNEGISPRH NPEFTMLEAY QAYGDIDAMR ELTEGLLASA ARAVFGSTRG ENELGVIDLT
PPFRAATMED LVSEAVGERV SLDEPARLLD LARRFDLAVL EPEAGRALVA LYEELVEPRL
IEPTFVLDFP ESVSPLARRH RSRPGRVERF ELVVGGRELV NAFSELNDPD EQRARFEEQA
RQRRAGDDEA MAYDADYVRA LEYGLPPTGG LGLGVDRLAM LLTGQRHIKE VILFPTLRPE
AGSSESDVDE DGASDETA
|
|---|
| |