| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1594 |
|---|
| Symbol | |
|---|
| ID | 8323685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1678116 |
|---|
| End bp | 1681511 |
|---|
| Gene Length | 3396 bp |
|---|
| Protein Length | 1131 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644952731 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_003110189 |
|---|
| Protein GI | 256372365 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCGTCGA TCGATCCGCA TGAGGCGCCG CTCGCCGCGC TCGTCGAAGA GCTCGCGGCG
ACGGTGGAAG ATCCGCCGGC CCTGAGCGCG GCTGGCGTCG CCCTCGCCTG GCACCGACTC
GCTCCGCGAC GGATGGTCGT CGTGGCCGAG GGTGATCGAG AAGCCGAGGC CATCGCCAAC
GATCTGCGGT GGTGGCTGCC TCGGATCCCT GTCGCGCTGT TGCCACCGTG GGATACCTTG
CCGTTCGAGC GCGTGGTTCC GAGCATGGGC ACGACCGCAG CGCGTCTGCG AGCGCTCGCG
TCCATCGTCG ATCCGCCTGA CGAGGGCATC GTCGTGGTCA CGACCGTGCG AGCCGCCTTG
ACGAAGCTCG TCGCCTCCGC GGCGCGCCTG GAGCGTCTGA TCGTGGCGCG AGGTGATGAG
CTCGTCCGTG ACGAGCTCAT CACTTGGCTC GAGGACGCTG GCTACGTGCG TGAGCCTCAG
GTCTCGGCCG CGGGTGAGTA CGCGGTGCGC GGATCGATCG TCGACGTCGC CGACCCGGGC
TTGGCGTCGC CGGTGCGGAT CGACCTGTTC GGAGACGAGG TGGATCGGCT CGCTTTCTTC
GATCCGACGA CGCAGCGCTC GGTCGGCGAC CTCGAGCGCG TCGAGCTCTT CCCGGCTCGC
GAAGTTCGGA TCGACACCGA CCTCGCCAAG CAACTCGAGG CCCTGGCTGC ACGCGTTCCA
GCGGTGGCCG ATCGGGTGGA GGCCGTGCTC GCGGGTCGAG AGCCCCCTGA GCCGCTCGTG
CCACTCGTGC TCGGCGATGT CGCACCGACG GTCCTCGACA TCGTCGACGA GGCCGACCTC
GTTCTCGTCC CGGCGAAGGG TATGGACGCG GTCATCGCCG ATCGCCTCGT CGCTGAGGAG
CGCTCCATTC GGGAGGCGCT CGCTCCGACC TGGGGACTCG AGGCTGACGC GCTCGGGTCG
GTCAGTCTCA TGGCCGAGCC GGAACGGCTG CGCGCAGTGC GCGCCCGCCT CGTATCGGCA
GATCCAGCCG GCTTTGGTGC TCGCCTCGGT GTGAGCCATC GCGACCTCGC AGGGGTGTTC
GGTCGCATTC GGAGTGCGCG GCGCGACGGA GTTCACGTCG TCGTCGCCAC GCATGGCTCG
GAACGTGCAC GTCATGTCGC CCAACGCCTT GGCGAGGAGG GCATCGACGT GCAGCTGGCC
TCGGTCGCCA CCTGCCTCGA GGGTCACGGC GTTCGAGTGG CCGCGGGGCT CGACCTCGTC
GAGAGCGTCG AGCTCGAGCC GGCATCGTTG GTGGTGATCG CGGATGCGAG TCTCGTACGG
CCGACGGCTC CTCGCGCTTC GGTGCCCACC CGTACGACCG GGGGTCTGAG CTTCGACGAC
CTCGTCGAGG GCAGCTTCGT CGTCCACGAG GCCTACGGCG TCGCGCGCTA TCGGGGCCTC
GTGCGCCAGG TGGTCGATGG CGTCTCGCGG GAGTACCTCG AGCTCGAGTT CGCGAGCGCG
GATCGGATCT TCCTTCCGTT CGAGCATCTC GCGCTCGTTG CCCCCTACGT CGGCTCCGAG
GAGCCTCGCC TCACCCGTCT GCGAGGCGGA GACTGGCAGC GTCAGGTCCA TCGTGCTCGT
CGCGCGGCGC AGGAGGTCGC CCAGGAGCTG GTGGTGCTCT ATCAGCGTCG CTTGGCCGCG
ACCGGTTCGA GCATCACGCC GGACCCGGTG CTGCTCTCGG AGTTCGCCGA ACGGTTCCCC
TATGAGCTCA CGCGTGATCA GGAGCGCACC ATTGCCGAGG TGCTCGCTGA TCTCGCCAAG
CCGGTGCCGA TGGATCGCCT CGTCTGTGGC GACGTGGGCT TCGGGAAGAC CGAGATCGCG
CTGCGCGCCG CGTTCGCCGT GGCATCCGAG GGCCGTCAGG TGCTCGTCCT CGCGCCGACG
ACCCTGCTCG CTGCCCAGCA TGCGGAGGTG TTCCGGGAGC GCTTCGAGGG CACGCCGATT
CGCGTGGGCA TGCTCTCGCG CCTCAGCACG GCTCGTGAGG CTGCGAGCAT CCGCGCCGAG
CTCGCAAGTG GCGAGCTCGA CGTGTGCATC GCGACGCACG CTGCGCTCGG CGCGTCGACT
CGGTTCGCCA GGCTCGGGCT CCTCGTGATC GACGAGGAGC AGCGCTTCGG GGTCCGACAC
AAGGAGCAGC TCAAGGAGGC GTTCCCCGGC GTCGACGTGC TCGTGCTCTC GGCCACCCCG
ATCCCGCGCA GCCTCGAACT GTCGCTCGTG GGCATCAGGG ATCTGTCCGT GCTGCGGACC
GCGCCCGTCG ATCGCCATCC GATCCTCACG CACGTCGGGC CCTTCGATCC CGCGGTCGTG
ACCGAGGCCA TCCGTCGGGA ACTCCTACGC GAAGGTCAAG TGTTCTTCGT GCACAACCGC
GTGCGCGACA TCGAGGCCTC GGCCCGTCTG GTCGCCGACC TCGTCCCCGA GGCCAGGGTG
CTCGTGGCGC ACGGGCAACT ACCGCCCGCT GCGCTCGAGC GGACGATGGC CCAGTTCTGG
CACGGAGAGG CCGACGTGCT CGTCGCCACC ACGATCGTCG AGAACGGGAT CGACCTCGCG
CGTGCGAACA CCCTGATCGT CGACCGTGCC GAGCAGCTCG GCCTCGCCCA GCTCCACCAG
CTTCGCGGGC GCGTCGGGCG CTCCGGGCGG CAGGCGTATG CCTACCTGCT CACCTCGACC
ACCGGCGGGA TCTCCGACAT CGCCCTCGAG CGACTGCGGA CGGTGGCAGA GAACACCGAC
CTCGGGGCGG GTTACCGGAT CGCGATGCGA GATCTCGAAC TTCGCGGGGC GGGCACGGTG
CTCGGCATGC GACAGTCGGG ACACGTCAGC GAGGTCGGCT ACGAGCTGTA CGTGCGGCTC
GTCGCGGAAG AGGTGGCGCG CATGGACGGC GTCGAGGAGC CGACGCCCGA TCGGGAGGTG
GCGCTCGACG TGCCGGTATC GGCGCTGCTC GCCGAGGACT ACGTTGCCGA AGCCGAGACT
CGGATGGACC TCTACCGGCG TCTCGCGAGG GCGCGGAGCC AGGCGGAGTT CGATCAGTTC
CTTGAAGAGC TGCGCGATCG CTTCGGGCCG CCGCCGGCCG AAGCGCTCGC CTTGGTGTCC
CTCGCGAAGG CACGGCGTCG GCTTGCGACC CTCGGTGCCG ATCATGCGCT CGTTCGGCGC
AACCCACGCA GCGCACGACT CGAGCTCGTC GTCGGTCCGC TCCAGCCGTC GGTGGCGACC
CGGCTGCGTC TAGAGCGTCG GCTCCATGGC GTCGTGAGTC GTGGCGACGA CCTTGCGGTT
CCCCTTGCGC GCCGGGAGGA CGCGCTTGGA CGTCTCGAGG CACTGCTGGA GATCCTCGAA
GGCGCGCCAT CGCCTGGAGT AGGTTCTCCC CAGTAG
|
|---|
| Protein sequence | MASIDPHEAP LAALVEELAA TVEDPPALSA AGVALAWHRL APRRMVVVAE GDREAEAIAN
DLRWWLPRIP VALLPPWDTL PFERVVPSMG TTAARLRALA SIVDPPDEGI VVVTTVRAAL
TKLVASAARL ERLIVARGDE LVRDELITWL EDAGYVREPQ VSAAGEYAVR GSIVDVADPG
LASPVRIDLF GDEVDRLAFF DPTTQRSVGD LERVELFPAR EVRIDTDLAK QLEALAARVP
AVADRVEAVL AGREPPEPLV PLVLGDVAPT VLDIVDEADL VLVPAKGMDA VIADRLVAEE
RSIREALAPT WGLEADALGS VSLMAEPERL RAVRARLVSA DPAGFGARLG VSHRDLAGVF
GRIRSARRDG VHVVVATHGS ERARHVAQRL GEEGIDVQLA SVATCLEGHG VRVAAGLDLV
ESVELEPASL VVIADASLVR PTAPRASVPT RTTGGLSFDD LVEGSFVVHE AYGVARYRGL
VRQVVDGVSR EYLELEFASA DRIFLPFEHL ALVAPYVGSE EPRLTRLRGG DWQRQVHRAR
RAAQEVAQEL VVLYQRRLAA TGSSITPDPV LLSEFAERFP YELTRDQERT IAEVLADLAK
PVPMDRLVCG DVGFGKTEIA LRAAFAVASE GRQVLVLAPT TLLAAQHAEV FRERFEGTPI
RVGMLSRLST AREAASIRAE LASGELDVCI ATHAALGAST RFARLGLLVI DEEQRFGVRH
KEQLKEAFPG VDVLVLSATP IPRSLELSLV GIRDLSVLRT APVDRHPILT HVGPFDPAVV
TEAIRRELLR EGQVFFVHNR VRDIEASARL VADLVPEARV LVAHGQLPPA ALERTMAQFW
HGEADVLVAT TIVENGIDLA RANTLIVDRA EQLGLAQLHQ LRGRVGRSGR QAYAYLLTST
TGGISDIALE RLRTVAENTD LGAGYRIAMR DLELRGAGTV LGMRQSGHVS EVGYELYVRL
VAEEVARMDG VEEPTPDREV ALDVPVSALL AEDYVAEAET RMDLYRRLAR ARSQAEFDQF
LEELRDRFGP PPAEALALVS LAKARRRLAT LGADHALVRR NPRSARLELV VGPLQPSVAT
RLRLERRLHG VVSRGDDLAV PLARREDALG RLEALLEILE GAPSPGVGSP Q
|
|---|
| |