Gene Afer_1560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1560 
Symbol 
ID8323650 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand
Start bp1640896 
End bp1642134 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content68% 
IMG OID644952696 
Productbeta-lactamase 
Protein accessionYP_003110155 
Protein GI256372331 
COG category[V] Defense mechanisms 
COG ID[COG1680] Beta-lactamase class C and other penicillin binding proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACACCA CGTCGCTCAC GCGAGCCCAT CCGAGCAGCC TCGGCTTCGA CGCGCACGTG 
CTCGAGCGCC TTCGGCGAAC CCTCGACACC TGGATCGAAA CCCAACGCCT CGCTGGCCTC
GCGGTCGCCA TCACTCGCGA CGGTGAGGTC GCCTTCGAGC ACTACACCGG ATGGGCCGAT
CGAGCGCGCA ACGTCCCGGT CACGCCGCAG ACGCTCTTTC GGATCTACTC GATGACCAAA
CCCATCACCT CGATCGCGGC GCTCCAGCTG GTCGAGGAGG GACGGATCCG CCTCGACGAT
CCGATCGCAA CGGTCTTGCC CGCCTTCGCC GAACCACGCG TACTCGTCTC TGGCGGTGCG
CCAGGGGGCT ACGCGCCAGC GGTGACGCGC GGGGCGATCG AACCCATTCG GCTCTGGCAT
CTGCTCACCC ACACCGCCGG TCTCACCTAC GACTTCCATC GCCAGAGCGC GGTGGACGCG
ATGTACCGCA AGCTCCAGCG CACCCTCGAC GGCGCCGACC TTGGAGCCTG GGTCGACGCA
CACGCCGAGC TCCCGCTCCT GTTCGACCCG GGCACGCACT GGAACTACTC CATCGCCACC
GACGTCGTCG GCCACCTGGT CGCGACGCTG CGAGGCGCAC CGCTCGCCGA CGTCCTCACA
ACCTTCGTCC TCTCGCCTCT CGGCATGCAC GACACGACGT TCGAGGTTCC GGCCTCAGAG
GCCGATCGCA TCGCCGCGAT CGTCACCCCT GGTGGCGACG GGACGCTCCA TCGCCTCGGG
CCCGTGCAGC CGGAGACCCG CGTGGCGCCG ATCGACTCCG GTGGCGGCGG GTTGTTCTCG
ACCCTCGAGG ACTACACACG CTTCAGCATC GCACTCGCCC TCGGTGGCCG CCTCGGGGAC
GCACGCCTGG TCGGACCGCT CACACTCGAT GCGATGCGAT CCAACCACCT TCCCGGAGGT
TCGGACATCC CCACCATGGC GATCGCCAGG CCACAACCCG GCGACCGCCC AGGGACCGGC
TTCGGCCTTG GCTTCTCGGT CGTCGATGAT CCGATTGCCT CACACCGACT CGGTCCGCGA
GGTTCCTACG GTTGGGGCGG CATGGCCTCG ACGACCTTCT TCGTGTGGCC GGCTCAACGC
GTGAGTGTCG TGTTCATGAC ACAGCTTGTG CCGTCGAACA CGTACCCGCT CGCCGAGGAA
CTCGAGACGT TCGTCGCAGC AGCGCTCACG CGGCCCTGA
 
Protein sequence
MDTTSLTRAH PSSLGFDAHV LERLRRTLDT WIETQRLAGL AVAITRDGEV AFEHYTGWAD 
RARNVPVTPQ TLFRIYSMTK PITSIAALQL VEEGRIRLDD PIATVLPAFA EPRVLVSGGA
PGGYAPAVTR GAIEPIRLWH LLTHTAGLTY DFHRQSAVDA MYRKLQRTLD GADLGAWVDA
HAELPLLFDP GTHWNYSIAT DVVGHLVATL RGAPLADVLT TFVLSPLGMH DTTFEVPASE
ADRIAAIVTP GGDGTLHRLG PVQPETRVAP IDSGGGGLFS TLEDYTRFSI ALALGGRLGD
ARLVGPLTLD AMRSNHLPGG SDIPTMAIAR PQPGDRPGTG FGLGFSVVDD PIASHRLGPR
GSYGWGGMAS TTFFVWPAQR VSVVFMTQLV PSNTYPLAEE LETFVAAALT RP