Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Afer_1505 |
Symbol | |
ID | 8323589 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidimicrobium ferrooxidans DSM 10331 |
Kingdom | Bacteria |
Replicon accession | NC_013124 |
Strand | + |
Start bp | 1570853 |
End bp | 1571410 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644952636 |
Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
Protein accession | YP_003110101 |
Protein GI | 256372277 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00989017 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGACCG ACGACGCGCA ACGCGAGTCC GTCGACATCG ATCGCCTCCG TACAGGCGAC CCGGACGAAT TCGGGCGATG GGTACGTCAC GTTGGCCCGG CCCTACGAGG ATTCCTCCGC GCCTCAGGAG TTGCAGACGT CGACGACATC CTGCAGGATG TGTGGCTTCG GCTGGTCCGT TCTCTCAGTC GCTTCGACGG CGACGAAGAC GGTTTACGCC GCCTGACGTT CACGATCGCC TATCGATCGC GTGCGGATGC ACTACGCGCG CTTGGACGGC GCCGCGAGGT CGCTTTCGAT CCTGCCGAAC TCCCACATCC GACGTTGTCG CCGGAGGACA TCGATGACGG CACCGTCACA GCCCTCCTCA GACGGCTACC GGAGCAGCAA GCGCTCGTGA TCGGCCTTCG TGTCTTCGGC GGCTTCGCTG CCACTGAGGT AAGCGACATG CTCGGGATAC CCGATGCGAC CGTACGGAGC CTCGCACATC GGGGACTCAA GGCCATGGCA CGGCTCCTCG AGCAACAATC CCCGTCGTCG CTGGAGGCAC CCTCGTGA
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Protein sequence | MSTDDAQRES VDIDRLRTGD PDEFGRWVRH VGPALRGFLR ASGVADVDDI LQDVWLRLVR SLSRFDGDED GLRRLTFTIA YRSRADALRA LGRRREVAFD PAELPHPTLS PEDIDDGTVT ALLRRLPEQQ ALVIGLRVFG GFAATEVSDM LGIPDATVRS LAHRGLKAMA RLLEQQSPSS LEAPS
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