Gene Afer_1499 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAfer_1499 
Symbol 
ID8323583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidimicrobium ferrooxidans DSM 10331 
KingdomBacteria 
Replicon accessionNC_013124 
Strand- 
Start bp1566358 
End bp1566828 
Gene Length471 bp 
Protein Length156 aa 
Translation table11 
GC content68% 
IMG OID644952630 
Product16S rRNA processing protein RimM 
Protein accessionYP_003110095 
Protein GI256372271 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0806] RimM protein, required for 16S rRNA processing 
TIGRFAM ID[TIGR02273] 16S rRNA processing protein RimM 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.105109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTTCGA GGGTCCGCAT TGGGGTCATC GGGCGCCCGC ACGGCGTGAA GGGCGCTGTG 
ACGCTTCACC ACGTCTCGGA TGTCCCAGGA CGATTCGTCG CCGACGCCCA CGTGTGGCTC 
GATGACGAGG TCGCTATGGT GATCACTGAG GTGCGGGGCC AACCCGACCG GCCTATCGTG 
CGCCTTCGAG GCGTGGAGAG CCGAGAAGCC GCGGAGGAGC TCCGAGGGCA CTCCCTGTGG 
GCGGAGCGTG TCGCACTGCC GGACGGCATG GTGATCGTTC CGGATCTCGT GGGTGCGCGA 
CTCGTCGACG CCGATGGCGT CGATCGAGGC CGCATCGTTG CGGTCGAGGC GAACCCGGCC 
AGCGAGTTGC TGGTCCTCGA AGGAGGTGGT TTGGTCCCCT CCATCTTCAT CACGCAGGTC 
GCCGACGGCT ACGTGGTCGC CGACCTTCCG CCCGGGCTCC TGGACGACTG A
 
Protein sequence
MSSRVRIGVI GRPHGVKGAV TLHHVSDVPG RFVADAHVWL DDEVAMVITE VRGQPDRPIV 
RLRGVESREA AEELRGHSLW AERVALPDGM VIVPDLVGAR LVDADGVDRG RIVAVEANPA 
SELLVLEGGG LVPSIFITQV ADGYVVADLP PGLLDD