| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_1192 |
|---|
| Symbol | |
|---|
| ID | 8323266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 1244953 |
|---|
| End bp | 1246050 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644952323 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_003109797 |
|---|
| Protein GI | 256371973 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.058782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCGCG TGCTGGTGCG GGCGGCCCTC CTCGGCATCG CTGCGGCCGT GACGGCCTCG
CTCCAAGCAG TGCCGCTTGC GCGTCCCGTC GATCTCGCCA CCGACCAGTC CGAAGCGGCT
CAGCTCGCTG CGAAGCTCAC CGCCCTCGAC GGTGCGGTCC AGGTCGCGGC GGAGCGCTAC
GACGCGGCGA CGGCGCAACT CGCCCAGGAT CAGGCCGAGC TCGCGGGTGT GCGTGCGCGT
ATCGCGAGCG AGACACAGGC GCTCGGGCGT GAACGGGCCC GGCTCGCCCG TGCGGCCCTC
GATCAGTTCA CCAGCGGTGA CGCATTGGCG GGCATGGGGG CGGTGCTCGC CGGGAGCCCG
AACAGCGCAG CGATCGTCCA GACGGACGTG TCGGTCGCCG CGACCGACGA GACAAGCCTC
GTCGCCCAGT ATCGGGCCAT GGCACTCGCG CTCGAGGTCG AGCGAACCCA GCTCGCGGCA
CTCGTGCGTT CGGCGAGCCA GACGGCGGCG GTAGCCGCCG CTGCGCGAGC GGCGGCCGCG
AGCGAGCAGG CGTCCGTCGA GTCGGCGTTG GCGTCGCTGA AGGGCCAGAT GGCCCAGCTC
GTCGCTCAGG CCCAAGCCGC TCAGCAGCGA GCGGTCGAGC AGCGGGCGAG TGTCCAACTC
GCCACCGAGA CGGCGGCGGT TGCCGCGACG CCGCCGGCTC AGGGTGCGTC CGCATCGCTG
CTCGAGCAGG CGGCCTCGAT CGCCGAAGCC ATCGCGGCGC GCGGGGATAC CGGTTACTCC
TATGGCGCCG CGGGCCAGTG GTCAGGAGGG GTGCAGTACT TCGACTGTTC GGGGCTCGTG
AGCTACGTCT TCGCCCAGCT CGGCCTTGCC CTCCCGCACG ACGCCGCTGC GCAGGCCGCC
GACTCGGCGC CTATCGGCTA CGGGCAGCTG GTCCCCGGTG ATCTTGTCTT CTACGATACG
TTGGGGTCGT CCGGTATCGA CCACGTCGCC ATCTACGTCG GCGGCGGGTC GGTGGTCGAA
GCCACGGAAC CCGGTCGGCC GGTCGCCGTC GACCCGATCG GGTGGTCGGG TACGCCGGTC
GCGTTCGGGC AGCCGTAG
|
|---|
| Protein sequence | MRRVLVRAAL LGIAAAVTAS LQAVPLARPV DLATDQSEAA QLAAKLTALD GAVQVAAERY
DAATAQLAQD QAELAGVRAR IASETQALGR ERARLARAAL DQFTSGDALA GMGAVLAGSP
NSAAIVQTDV SVAATDETSL VAQYRAMALA LEVERTQLAA LVRSASQTAA VAAAARAAAA
SEQASVESAL ASLKGQMAQL VAQAQAAQQR AVEQRASVQL ATETAAVAAT PPAQGASASL
LEQAASIAEA IAARGDTGYS YGAAGQWSGG VQYFDCSGLV SYVFAQLGLA LPHDAAAQAA
DSAPIGYGQL VPGDLVFYDT LGSSGIDHVA IYVGGGSVVE ATEPGRPVAV DPIGWSGTPV
AFGQP
|
|---|
| |