| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0603 |
|---|
| Symbol | |
|---|
| ID | 8322662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | + |
|---|
| Start bp | 608487 |
|---|
| End bp | 609608 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644951741 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_003109230 |
|---|
| Protein GI | 256371406 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGGGC CGCTCGCTGG CGTTCGGGTC CTCGAGCTCG GGGGGATCGG CCCGGTCCCC
TTTGCCGGCA TGGTGCTCGG CGACCTCGGC GCGACGGTGG TACGGATCGA GCCACCGAGC
GGGGCCGGAC TCGGTGCCGA TGCGTTGGCA CGAGGCAAGC ACGTCATTCG CATCGATGCC
AAGGACCCCG AGGGCAGGGC GCTCATCCGT GAGCTCGCGA GCCGTGCGGA CGTCTTCGTG
GAGGGGTTTC GGCCAGGGGT GGTCGAGCGG CTCGGCATCG GTCCTGGCGA GTTGTGCGCT
GCGAACGACC GCTTGATCTA CGTTCGCACG ACGGGGTTCG GCCAGAGCGG GCCGCTCGCG
GAGCGGGCGG GGCACGACAT CACCTACCTC GCCATCGGGG GCGCCCTCGG AGCGACGGGA
TCGGCGGATG CGCCGCCGCT GCCTCCGCTC AATCTGCTGG CCGACTTCGG GAGCGGGGGC
ATGCTGAGCG TCGTCGGGGC GCTCGCCGGC CTCATCGAGC GCGAGCGCAG CGGTCGGGGG
CGTGTGGTGG ATGCGGCGAT GGTCGACGGG GTCCTCCTCA CCGAGACCAT GGTGCTCGCC
ATGATGAGAG AGGGTGCCTG GCGGCCCATG CGGGAGGCGA ACCTGCTCGA CGGCGGGGCA
CCGTTCTACC GGACCTACCG CTGCGCCGAT GGGCGCTGGA TCGCCGTCGG CGCGCTCGAG
CCGCAGTTCT TTCACACCCT GCTCCGCGAG CTCGGCCTCA TCGAGCGCTT CGACCCGGCC
GCCCAGTACG AGCGCGCTCG CTGGGGCGAG CTCGCGTCGC TGCTCGCGGA TGCCTTTGGC
TCTGCACCAC GAGCCGTGTG GGAGGAGCGC TTCGCCGGTC TCGATGCCTG CGTCGCCCCG
GTGCTCGGCC TCGACGAGCT CGCGAGTGCT CCCCAGCACG TCGAGCGACG CTCGTTCGTC
GAGGTCGACG GCCATCTCGA GCCGGCGCCG GCTCCCCGAT TCGATGGCGA AGCGGTCGAG
AGTCGTCCGG GGCCCTCGCG CGACGCGGTC GCCGCGCTCG TCGCAGCAGG GCTCGAGCCG
GAGCGGGCGC GCGCTGTCGT GGGGCTCGGC CTCGTGGTGT GA
|
|---|
| Protein sequence | MSGPLAGVRV LELGGIGPVP FAGMVLGDLG ATVVRIEPPS GAGLGADALA RGKHVIRIDA
KDPEGRALIR ELASRADVFV EGFRPGVVER LGIGPGELCA ANDRLIYVRT TGFGQSGPLA
ERAGHDITYL AIGGALGATG SADAPPLPPL NLLADFGSGG MLSVVGALAG LIERERSGRG
RVVDAAMVDG VLLTETMVLA MMREGAWRPM REANLLDGGA PFYRTYRCAD GRWIAVGALE
PQFFHTLLRE LGLIERFDPA AQYERARWGE LASLLADAFG SAPRAVWEER FAGLDACVAP
VLGLDELASA PQHVERRSFV EVDGHLEPAP APRFDGEAVE SRPGPSRDAV AALVAAGLEP
ERARAVVGLG LVV
|
|---|
| |