| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0392 |
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| Symbol | |
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| ID | 8322451 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013124 |
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| Strand | + |
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| Start bp | 403393 |
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| End bp | 407256 |
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| Gene Length | 3864 bp |
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| Protein Length | 1287 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644951544 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_003109033 |
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| Protein GI | 256371209 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTCGACC TGGGTCGATT CGACCAGATC CGCATCGGGC TTGCCACGAC GGAAGCCATC
CGCGCCTGGT CACACGGCGA GGTGAAGAAG CCGGAGACGA TCAATTACCG TACGTTGCGT
CCGGAACGCG ATGGGCTCTT CTGCGAGCGC ATCTTCGGCC CTACGCGCGA CTGGGAGTGC
CAGTGCGGCA AGTACAAGCG CGTGCGCTTT CGCGGGATCG TCTGCGAGCG CTGTGGCGTC
GAGGTCACCC GCTCCAAGGT CCGACGGGAG CGGATGGGCC ACATCGAGCT CGCAGCACCG
GTGGTGCACA TTTGGTACCT GCGCGGGACG CGTTCGTGGC TGGCCTACCT GCTCATGGGG
ACCTCCCCCA AGGAGGAGCT CAAGGCCAAG CAGCTGGAGA AGGTGATCTA CTTCGCCGCC
AACTTGGTGA CCTGGGTCGA CGAGGAGCGT CGGCACCAGG ACCTGCCGAA CCTCGAGGTC
GAGGTGCTCG AGGAGGTTCG GGCGATCGAG TCGGAGCGTG ACGTCGAGCT CGAGCGCCGG
TACCAGGCGA TGGAGGCGGA GCTCGCCGAG CTCGAGGAGC AGGGTGCTCG CGAAGCCGAG
GTGCGCCAGC GCCAGCGCGC GCTCGAGCGG GAGATCACGC AGCTCCGCGA GCGCTACGCG
GCGCGCATCG ACCTCGCGCG TAGGACCTTC GACGAGTTCC GCGAGCTCTA CCCGCGCCAG
ATCATCGAGG ACGAGCTGCT GTGGCGCGAG CTGCGGTCGC GGTATGGCTC CTACTTCGAC
GGCGGCATGG GGGCCGAGGC GATCGCCGAC CTCATCCGTC GTATCGACTT CGATGCCGAG
CTGGCCAAGC TCCGCGAGCT CATCGACCCC GCCGAGGGTC GCCGCCCGTT GTCGGCACAG
CGTCGCCAGA AAGCCATCCG ACGCCTGCGC ATCCTCGCCG CGTTCAACCA GCGCGACGAG
GAGGGTCGTC GTATCAACGA CCCGATGGCG ATGATCCTCG AGGTCGTCCC GGTGATCCCC
CCGGACCTGC GTCCGATGGT GCAGCTCGAC GGCGGGCGGT TCGCGACGTC GGACCTCAAC
GATCTGTATC GGCGCGTGAT CAATCGCAAC AACCGGCTCA AGCGTTTGTT GGATCTCGGC
GCGCCGGAGA TCATCGTCAA CAACGAGAAG CGCATGCTCC AGGAGGCGGT CGACGCCCTC
TTCGACAACG GTCGCCGTGG GCGGCCGGTG GTCGGCCCGG GCAACCGTCC TCTGAAGAGC
CTCTCCGACA TGCTCAAGGG CAAGCAGGGT CGCTTCCGCC AGAACCTGCT CGGCAAGCGC
GTGGACTACT CCGGCCGGTC CGTCATCGTC GGCGGCCCGA CGCTGCAGCT CCATCAGTGT
GGGCTCCCGA AGATCATGGC GCTCGAGCTG TTCAAGCCGT TCGTCATGCG TCGCCTGGTG
GAGTTGGGCT ATGCCCAGAA CATCAAGTCG GCCAAGCGCA TGGTCGAGCG TCGGCGTCCC
CAAGTGTGGG AAGTGCTCGA GACGGTGATC AAGGAGCATC CGGTGCTCCT GAACCGTGCA
CCGACCCTGC ACCGACTCGG CATCCAGGCG TTCGAGCCGG TGCTGGTCGA GGGTAAGGCG
ATCCAGATCC ATCCTCTGGT GACGACCGCG TTCAACGCCG ACTTCGACGG CGACCAGATG
GCGGTGCATC TGCCTCTGTC GCCTGAGGCG CAGGCCGAAG CCCGCGTGCT CATGCTCTCG
GCGAACAACA CGGTGTCGCC AGCGACCGGA CGGCCGATCA CGGTCCCCGG GCTCGACATG
GTGTTCGGTC TCTTCTATCT CACCATCGTG CGCGAAGAGG AGCCAGGTGC CGGCAAGGTG
TTCCGCCACG ACTATGAAGT GGTCCGGGCC TGGGAAACCG GCAATCTCGG CTTGCACGCG
CCGATCACCC TCCGTCGTCG CGATGGCGAT GGCAACGTCG AAGAGCTGCG GACGACAGCC
GGGCGTGTGA TGTTCAACCA GGCGCTGCCG GCCGACTTCC CCTTCGTCAA CGAGGTCGTC
GGGAAGAAGG CGCTTCCCAT CGGCTCGATC GTCGAGCGGG TGGTGACCCA GTACCCCCGC
AACGTCATCG AGGAGACGCT CGATCGCATC AAGTCGGTTG GGTTCACCTT CGCGACGCGC
GCTGGGCTCA CCATCTCGAC CGACGACGTC ACAACCCCGG CCGCCAAGGC CGAGATCCTC
GATCGCTACG AGCGCGAGGC GGACAAGGCC GAGGCGCAGT ACCGGCGAGG CATCATCACC
GACGACGAGC GCAAGCAGAA GGAGATCGAG ATCTGGACGG CGGCGACCGC GGAGATCGGT
CGGGCCATCG ACGAGATGCT CGCCTCCAAC CCGCTCAATC CGCTCGCGAT GATGGTCGAG
TCGGGAGCGC GAGGCAACCC TCAGCAGATC CGCCAGATCT CCGGCCTCAA GGGCCTCGTC
GCCAATCCGC GCGGTGAGAT GATTCCGCGC CCGATCAAGT CGTCGTTCCG TGAGGGCCTC
GAGGTGCTCG AGTACTTCTT GTCGACGCAC GGTGCGCGCA AGGGCCTCGC CGACACGGCG
CTGCGCACCG CCGACTCTGG GTATCTCACC CGTCGCCTCG TCGACGTCGC CCAGGAGCTG
ATCGTGCGCG AAGAAGATTG TGGCACGTCG CGGGGGATTT GGATCGACGA CGTCGCCGAG
GACTCGGCCC AGCGTCGCAG CTACCTCGAG ACGCGGGCGT TCGGACGGGT CCTCGCAGAG
GCGGTCGATC TTGGCGACGG GTCGCAGCTC CCGGCCGGGA CGTTGCTCAC CGACGAGCTC
GTCAAGCAGC TGGCAGCCGA TCCGGCAGTC GAGCGGATCC GTGTGCGCAC CCCGCTCACC
TGCGAGACGC CCCACGGCGT GTGTGCGACC TGTTACGGCC AAGGTTTTGG GGGGAGGGGG
CTCATCGAGC TCGGCGAGGC CGTCGGCGTC GTCGCGGCCC AGTCCATCGG CGAGCCTGGG
ACGCAGCTCA CCATGCGAAC CTTCCACCAG GGCGGCGTCG CGGGCGCCGA CATCACGCAC
GGCTTGCCGC GCGTGGTGGA GCTGTTCGAG GCGCGTTCGC CTCGTGGAGC CGCGGTGCTG
GCGCATGCGT CCGGTGTCGT GCACATCGAG GAGGAAGAGA ACGGTCGGCG GGTCACCATC
ACCCACGACG ACGGCTCCGA CGAGGTCTAC GTGCTCCCGC TCAGGGCCCA TCTCGAGGTG
GCCGAGGGCG AAGTGATCGA GGCCGGCGAG GCCATCGTGA GCGGTCCGAA GGACCCCAAG
CAGCTCCTCG AGATCAAGGG CATTCGCGAG ACCCAGCGTT ACCTGGTCGA GGAGGTCCAG
AAGGTCTATC GCGACCAGGG TGTGTCCATC CACGACAAGC ACATCGAGCT CATCGTCCGT
CAGATGCTGC GCCGAGTGCT CGTGGCCGAG CCTGGCGATT CCCCCTTCTT GCCGGGAGAA
CGCGTGGACA CCCAGCGCTT TGCCGAGGTG AACCGCGAAC TGTTCGCCGA GGGGAAGCGC
CCTGCCGAGG GTCGGCCGGA GCTCATGGGT ATCACCAAGG CGTCGCTCGC GACGGAGTCG
TGGCTCTCGG CGGCCTCCTT CCAAGAGACC ACTCGGGTGC TCACCGAGGC CGCGATCGAG
GGGCGTTCGG ATCACCTGCT CGGCCTCAAG GAGAACATCA TCCTCGGCAA GCTGATCCCG
GCAGGTACGG GTGCGCCGCG TTACCGGTCG GTCGCGGTCA AGGCTCCCCA CTATCGCCGA
CTCGCGTACT GGTCGAGCGA GGAAGACCTC GGTGGGTTCG ACGGGGGGCC TGGCTATGAG
GCGCATGGCG GCCCTGTAGA CTGA
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| Protein sequence | MLDLGRFDQI RIGLATTEAI RAWSHGEVKK PETINYRTLR PERDGLFCER IFGPTRDWEC
QCGKYKRVRF RGIVCERCGV EVTRSKVRRE RMGHIELAAP VVHIWYLRGT RSWLAYLLMG
TSPKEELKAK QLEKVIYFAA NLVTWVDEER RHQDLPNLEV EVLEEVRAIE SERDVELERR
YQAMEAELAE LEEQGAREAE VRQRQRALER EITQLRERYA ARIDLARRTF DEFRELYPRQ
IIEDELLWRE LRSRYGSYFD GGMGAEAIAD LIRRIDFDAE LAKLRELIDP AEGRRPLSAQ
RRQKAIRRLR ILAAFNQRDE EGRRINDPMA MILEVVPVIP PDLRPMVQLD GGRFATSDLN
DLYRRVINRN NRLKRLLDLG APEIIVNNEK RMLQEAVDAL FDNGRRGRPV VGPGNRPLKS
LSDMLKGKQG RFRQNLLGKR VDYSGRSVIV GGPTLQLHQC GLPKIMALEL FKPFVMRRLV
ELGYAQNIKS AKRMVERRRP QVWEVLETVI KEHPVLLNRA PTLHRLGIQA FEPVLVEGKA
IQIHPLVTTA FNADFDGDQM AVHLPLSPEA QAEARVLMLS ANNTVSPATG RPITVPGLDM
VFGLFYLTIV REEEPGAGKV FRHDYEVVRA WETGNLGLHA PITLRRRDGD GNVEELRTTA
GRVMFNQALP ADFPFVNEVV GKKALPIGSI VERVVTQYPR NVIEETLDRI KSVGFTFATR
AGLTISTDDV TTPAAKAEIL DRYEREADKA EAQYRRGIIT DDERKQKEIE IWTAATAEIG
RAIDEMLASN PLNPLAMMVE SGARGNPQQI RQISGLKGLV ANPRGEMIPR PIKSSFREGL
EVLEYFLSTH GARKGLADTA LRTADSGYLT RRLVDVAQEL IVREEDCGTS RGIWIDDVAE
DSAQRRSYLE TRAFGRVLAE AVDLGDGSQL PAGTLLTDEL VKQLAADPAV ERIRVRTPLT
CETPHGVCAT CYGQGFGGRG LIELGEAVGV VAAQSIGEPG TQLTMRTFHQ GGVAGADITH
GLPRVVELFE ARSPRGAAVL AHASGVVHIE EEENGRRVTI THDDGSDEVY VLPLRAHLEV
AEGEVIEAGE AIVSGPKDPK QLLEIKGIRE TQRYLVEEVQ KVYRDQGVSI HDKHIELIVR
QMLRRVLVAE PGDSPFLPGE RVDTQRFAEV NRELFAEGKR PAEGRPELMG ITKASLATES
WLSAASFQET TRVLTEAAIE GRSDHLLGLK ENIILGKLIP AGTGAPRYRS VAVKAPHYRR
LAYWSSEEDL GGFDGGPGYE AHGGPVD
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