| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6857 |
|---|
| Symbol | |
|---|
| ID | 8331077 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 7993385 |
|---|
| End bp | 7994209 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644947289 |
|---|
| Product | helix-turn-helix domain protein |
|---|
| Protein accession | YP_003104499 |
|---|
| Protein GI | 256380839 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0788983 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGTGCGGT GCGCGTTCGG GCCGAAGGTC GCCAGGCGGC TGCTGCGGTG CGAGTTGGAG
CGGTTGTGCG GGGAGTCCGG GAGGACGCAC GCGCAGGTGG GGGAGCGGCT GGGCATGACG
CGCAGCGGGT TCACCCAGTT CCTGCGTGGA CGGACCCTGC CGAGCAGGCC GGTGCTGGAG
GTGCTGGTGT CCTACTTCGC GCGCCCGGAG CACCTGCCGC TGCTGCTGGA GCTGCTGTCC
GCGGCGAAGG CGAGGCCGGA CCGGGTGGTC GAGCTGGTGA CGCCGCACGA GCCGGGGCCG
GTGCTGGTGT CGGTGGCGAC GAGCATCGAG GCGTACGACC CGATGCTGGT CAACGCGCTG
CTGCGCAGCG AGCCGTACAC CAGGGCGGTG ATCGAGCACC GGGGCGGCGG GGAGCCGGAG
GTCGCGGAGG CGCTCACCGG GCAGGCCCCG CTGACGCGCG CCACCGCGCC GGTGCGGTTG
TGGGCGGTGC TGGAGGAGCG GGTCCTGCGG CGGCCGGTCG GCGGGGCGGG GGTGGTGCGG
GGGCAGGTGG AGCACCTGCT GGAGCTGGCG GAGCTGGACA ACGTCACCTT GCAGGTGCTG
CGCGAGGAGG TGGGGCTGCA CCCGTCGCTG CAGGGGCCGA TCTTCCTGCT GCGCTTCGAC
GACCACTGGC GCGTGGCGTA CGAGGAGACG AGGAGGTGCG GCTACTACTA CGACGCGGTC
GACGCGGTGG AGGACTACGG GCAGGCGATG AACCACCTGC GGCACCTGTC GCTCGACCCG
GCGGCGACGA AGGACTTCCT GGTGGGCCTG CGCGCGGAGC TGTGA
|
|---|
| Protein sequence | MVRCAFGPKV ARRLLRCELE RLCGESGRTH AQVGERLGMT RSGFTQFLRG RTLPSRPVLE
VLVSYFARPE HLPLLLELLS AAKARPDRVV ELVTPHEPGP VLVSVATSIE AYDPMLVNAL
LRSEPYTRAV IEHRGGGEPE VAEALTGQAP LTRATAPVRL WAVLEERVLR RPVGGAGVVR
GQVEHLLELA ELDNVTLQVL REEVGLHPSL QGPIFLLRFD DHWRVAYEET RRCGYYYDAV
DAVEDYGQAM NHLRHLSLDP AATKDFLVGL RAEL
|
|---|
| |