Gene Amir_6851 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_6851 
Symbol 
ID8331071 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp7987500 
End bp7988507 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content74% 
IMG OID644947283 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_003104493 
Protein GI256380833 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.200483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCCG TTCCGCGCAG CAGCACCCGC GCCCACTGTC CACCCGGCCG GTGGTGGCGG 
GGCGCGGCGC TCCTGACCCT GCTCGCCGCG TGCACCGGCC CCACCGCGGA GGACCCCCGC 
CCCACCGGCG CGCTCGCCGA GACCGGCGGT CCGCTGCGGA TCGCCGTCAT CACCCACGGC 
ACGGCGGGCG ACGCCTTCTG GAACGTGGTC AAGAACGGCG CCACCGACGC GGGCGAGCAG 
CTCGGCGCCG CCGTCGACTA CAACTCCGAC GGCGACCCCG GCAAGCAGGC CACCCTCGTG 
GACAACGCGG TCGCGCAGGG CGTCGGCGGC ATCGTCGTGT CGATGGCCAA CCCGGACGCG 
CTGCGCCCCG CCGTCGAGGG CGCCGTCCGC GCGGGCATCC CGGTGGTCAC CATCAACTCC 
GGCGGGGCCC GCAGCGCCGA GTTCGGCGCG ATCGCCCACG TCGGCCAAGA GGAGGACCTC 
GCCGGTGAGG AGGCGGGCAA GCGCCTGAAG GCGGAGGGGA AGTCCAAGCT GCTCTGCGTG 
ATCCACGAGG CGGGCAACAC CGGCCTCAAC CAGCGCTGCG ACGGGGCCCG CGCGGGCTTC 
GGGGGTGAGA CCACCACGCT CCAGGTCGAC ATCAACAACC CGACCGACGC GGAGGCCCGG 
ATCACCGGCG CGCTGCGCAC CGACCCGTCG GTGGACGCCG TGCTGGCGCT CAACTCCCAG 
GTCGCCGCGA CCGCCGTCAC CGCGGGCAGG TCGGCCGGGT CTAAGGCCGC GGTCGTCACG 
TTCGACCTCA ACACCGACGT CACCGACGCG ATCAAGGCCG GGGACGTGCT GTTCGCCGTC 
GACCAGCAGC AGTACGAGCA GGGCTACCTC CCGGTCGTGC TGATCAAGCT CTACCGGGAC 
AACGCCAACA CCGTCGGCGG CGGCAAGCCC GTCCTCACCG GACCGGGCAT CGTGGACCGC 
TCCACGGTGG ACCGGGTCGC CGAGTACGCC GAGCGCGGGA CCAGGTGA
 
Protein sequence
MTPVPRSSTR AHCPPGRWWR GAALLTLLAA CTGPTAEDPR PTGALAETGG PLRIAVITHG 
TAGDAFWNVV KNGATDAGEQ LGAAVDYNSD GDPGKQATLV DNAVAQGVGG IVVSMANPDA 
LRPAVEGAVR AGIPVVTINS GGARSAEFGA IAHVGQEEDL AGEEAGKRLK AEGKSKLLCV 
IHEAGNTGLN QRCDGARAGF GGETTTLQVD INNPTDAEAR ITGALRTDPS VDAVLALNSQ 
VAATAVTAGR SAGSKAAVVT FDLNTDVTDA IKAGDVLFAV DQQQYEQGYL PVVLIKLYRD 
NANTVGGGKP VLTGPGIVDR STVDRVAEYA ERGTR