Gene Amir_6515 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_6515 
Symbol 
ID8330727 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp7654778 
End bp7655842 
Gene Length1065 bp 
Protein Length354 aa 
Translation table11 
GC content77% 
IMG OID644946943 
Producthistone deacetylase superfamily 
Protein accessionYP_003104161 
Protein GI256380501 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCTGGC ACGACGCCTG CCTGGAGCAC GACGCGGGCT CCGGCCTGTG GGAGCTGCCC 
GGCGAGTGGG ACTGGCTCGA CGAGCCCGAG CCGCACCCGG AGAGCGCCGC CCGGCTGCGC 
ACCTTCCGGC ACGCGCTGCG GCACGGCCCC GTCGCGGGCC ACCTGACCTG GTCGACCGGC 
CGCGCGGCCA CCGGGGAGGA GCTCGCGCGC GTCCACGAGC CCGGCTACCT GGCCGCGCTC 
GAAGCCGCCT GCGCCGGGCC CTGGCGGGTC GCGCTGGAGG TGAACACGCT GGTCGGGCCG 
GGTTCCTGGG AGGCCGTGCT GGCGGCGGCG GGCACCGCGC TCGCCGCGCA CGACGCGGTC 
GCCTCCGGCC GCACCCGGCT GGCCTACGCG CTCGTCCGCC CGCCCGGCCA CCACGCCCAG 
CCGGGGCTCG CCGACGGCTA CTGCCTGGTC AACAACGCCG CGCTGGTCGC CGAGACCGCG 
CGCCGGGCCG GACGGCGGGT CGCGGTGCTC GACTGGGACG TGCACCACGG CAACGGCACC 
CAGGAGGTGT TCGCGGGCAC CGAGGACGTG CTGACCGCGT CGATCCACAT GCGGCACGGC 
CCGTGGGGCG CGAACCACCG GCAGACCGGC GCGCCCGACG AGCCCGCGCT CGCCAACGTC 
AACGTCGAGC TGTCCCTGGG CGCGGGCGAC CACGCGTACG CGCGCGCGAT GGACGAGGTG 
GTGCTCCCGG CGGTCCGCGA GTTCGGCGCG GACTTCCTGG TGTGCGCCTC CGGCTTCGAC 
GGCTCCGCGT TCGACCCCAA CGGCAGGCAC AACCTCACCG CCGCGGGCTA CCGGGCGATC 
GGCGCGCGGG TGGCCGCCGA GGGGCTGCCG ACCGTGCTCA CCCAGGAGGG CGGCTACCTG 
CGCGGGTACG CCGCGCTGTG CCTGCACGCG CTGGTGGAGG GCCTGCTCGG GCTCGACCTG 
CTGGAGGACC CGCTGGCCTA CGTGCCCGAC GACACCCAGC TGGTGGACGC CGACCTCGCC 
CTGGTCAGGG CCGCGCTGGC GGACCGCTGG GAGTTCGCGC GCTGA
 
Protein sequence
MFWHDACLEH DAGSGLWELP GEWDWLDEPE PHPESAARLR TFRHALRHGP VAGHLTWSTG 
RAATGEELAR VHEPGYLAAL EAACAGPWRV ALEVNTLVGP GSWEAVLAAA GTALAAHDAV 
ASGRTRLAYA LVRPPGHHAQ PGLADGYCLV NNAALVAETA RRAGRRVAVL DWDVHHGNGT 
QEVFAGTEDV LTASIHMRHG PWGANHRQTG APDEPALANV NVELSLGAGD HAYARAMDEV 
VLPAVREFGA DFLVCASGFD GSAFDPNGRH NLTAAGYRAI GARVAAEGLP TVLTQEGGYL 
RGYAALCLHA LVEGLLGLDL LEDPLAYVPD DTQLVDADLA LVRAALADRW EFAR