| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_6008 |
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| Symbol | |
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| ID | 8330218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 7053052 |
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| End bp | 7053735 |
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| Gene Length | 684 bp |
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| Protein Length | 227 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644946441 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 1 |
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| Protein accession | YP_003103661 |
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| Protein GI | 256380001 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTGCCTGG ACGTCGACGA CACCCTCGTC GACTACAGCA CCTCGTCCAG GGCGGCGCTG
GCCTCGATGG TCGGCAGCGA CGACACCTTC CCGCTGTGGC AGCGCATCAC CGACGACCAC
TGCGCCCGGA TGCTCACCGG CGAGTTCGAG TACTCGACCA TGCGCAACAT CAGGACACGG
GCGTTCTTCG CCGCCCTCGG CGAGGAGCTC GACGAGCACG AGGCCACCCG GCGGGAACTG
GGGCGGCAGG AGGCGCTGGC GGGAAGCTGG CGCCTCTACC CCGACGTCGT CCCCTGCCTC
GACTGGCTCC GGGCCGCGGG ACTCCCCCTC GCGGCCGTCA GCAACGCCTC AGGGCGGCAC
CAGCGGGACA AGATCGCCAC GCTGGGCCTC GCCCAGTACT TCGACACCGT CCTCATCGCG
GGCGAGGTCG GCGCGGCGAA ACCGGACAGA GTGATCTTCG ACACGGCCTG CGCGGGCCTG
AACACCGCGC TGGCCGACAC CGTCCACGTC GGCGACCGGC TGTACGCCGA CGCCATCGGG
GCGCGGGACG CGGGTATGCG CGGCGTCTGG CTCGACCGCA ACGGCCAGGG CGACGGGAGT
CTGCCCCACG GCGTGTCCGC CATCCACACT CTCGCTGAGC TGCCAGAACT GCTCGTCTGC
GAGCTGGCGG GGACCCGTGT GTGA
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| Protein sequence | MCLDVDDTLV DYSTSSRAAL ASMVGSDDTF PLWQRITDDH CARMLTGEFE YSTMRNIRTR
AFFAALGEEL DEHEATRREL GRQEALAGSW RLYPDVVPCL DWLRAAGLPL AAVSNASGRH
QRDKIATLGL AQYFDTVLIA GEVGAAKPDR VIFDTACAGL NTALADTVHV GDRLYADAIG
ARDAGMRGVW LDRNGQGDGS LPHGVSAIHT LAELPELLVC ELAGTRV
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