Gene Amir_5956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5956 
Symbol 
ID8330163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand+ 
Start bp7002996 
End bp7003676 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content75% 
IMG OID644946387 
ProductSCP-like extracellular 
Protein accessionYP_003103610 
Protein GI256379950 
COG category[S] Function unknown 
COG ID[COG2340] Uncharacterized protein with SCP/PR1 domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGATAC GGTGCGCGAC CGTGAGCGCG CGGAGCGGGA AGAGGTCCGC CATCGGCGGG 
CTCCTCGGCC TGCTGCTCGG CGCGGCGGGC GTCGGCTCCA TCGCCCTCCT CGTCGGCCCG 
ACCGCCTCGA CGTCGTCCCA GCAGGACCCG CCGCCGGGCG CGCCCCGGTC CGGTCCCGGT 
CCGGGCCCCG GTCCCTCAGG GGCTCCCGGC GGGCCCTGGC CGACCACCGC CACGACCAGC 
GGGCTTGCCC CGGACTCCCC CGCACCGGCA AGCTCGTCGC CGACGTTCCC TCAGGACCCG 
CCGCCGCTGG ACGTGGTGCA GGCCGACCGG GTCGTGCGGC TGGTCAACCA GGCGCGCGGC 
GCGGCGGGGT GCGCGGCGCT GGGCGTGGAC GACCGGGTGG TCACCGCCGC CAGGGCGCAC 
AGCGCGGACA TGGCGAGCCG GGGCTACTTC GCGCACACCA GTCCGGAGGG TGTGGACTTC 
GCCACCCGGA TGCGCGAAGC GGGCCATCCG CGACCCGCCG GTGAGAACAT CGCCATGGGC 
CAGCGGAGCG CGGAGGACGT CGTGGGCGCG TGGTTGGACT CCGAGGGTCA CCGTCGGAAC 
ATCCTCGACT GCTCGTTCAC CACCACCGGT GTCGGTCTGG ACACCCGTGG CTGGTACTGG 
ACCCAGAACT TCGGCCGTTG A
 
Protein sequence
MVIRCATVSA RSGKRSAIGG LLGLLLGAAG VGSIALLVGP TASTSSQQDP PPGAPRSGPG 
PGPGPSGAPG GPWPTTATTS GLAPDSPAPA SSSPTFPQDP PPLDVVQADR VVRLVNQARG 
AAGCAALGVD DRVVTAARAH SADMASRGYF AHTSPEGVDF ATRMREAGHP RPAGENIAMG 
QRSAEDVVGA WLDSEGHRRN ILDCSFTTTG VGLDTRGWYW TQNFGR