| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5778 |
|---|
| Symbol | |
|---|
| ID | 8329985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 6813290 |
|---|
| End bp | 6815737 |
|---|
| Gene Length | 2448 bp |
|---|
| Protein Length | 815 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644946214 |
|---|
| Product | transglutaminase domain protein |
|---|
| Protein accession | YP_003103437 |
|---|
| Protein GI | 256379777 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.131125 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCCGGGA GAGGGAGCGC GGGCGGCGAC TGGGTCGTGG CCACGACGCC CGCCGTCGCG
GGGTTGGCGA CGCTGTGCAC GGCGATGGCG CTGTCCAGCG TGCTCACCGG GACGCTGTGG
GTGGTGTACC TGGGGGTGGC GATCGCCGTC ATCGCCGGGG TGGGCGTGCT GCTCAGGTCG
GTGCGGGTGC CCGCGCCGCT GGTGCCGTTC GGGCAGTTCC TGGCGCTGGC GTGCCTGCTG
GTGACGATCT TCACCAGGAC CGGCGTGCTG GTGGTGCTGC CGGGGCCGCA GTCGCTCGGC
GACCTGGTGG GGGTGCTCGG GGCGGCGCTG GAGGAGGTGC AGACCGGGAT ACCGCCGGTG
CCGGACAGCC CGGCGATGCG GTGCCTGGTG ATGCTGGCGA TCGGCGTCGT GGCGGTGGTG
GTGGACACCC TGGCGGTGGC CGCCGCCGCG CCCGCCGCGT CGGGGCTGGT GCTGCTGTGC
GTGTTCGCGG TGCCGGTGTC GCTGGCGGAC GAGATGCTGC CGCTGTGGAT CTTCGTGCTG
GGGGCGGCGG CGTTCGCGCT GCTGCTGGCC GTGGACGGGC AGCACCGGCA CAGCGCGTGG
CGGGGCAGGC TGCCCAGGGG CGCCGGGGTG AACTCGGCCC CCGCCGCGAC GGCGGTGGCG
GGCGCGGCCG TGGTGACGGC GCTGCTGGCG GGCCTGCTGA GCGCGCCGCT GGTCGGCACG
GTCGGGCGGC TGCCGGGCAC CGGTGAGGGC GGCGGGACGG GCAAGCTCGG CCTCGAGCCG
ATGACGGAGC TGCGCGGGAT GCTCAACCGG GGGCAGAACA AGGAGCTGTT CCGGGTGCGG
GACCTGCCGA GGCAGGCGTA CATGCGGGTG GCGACGCTGC GCGCGTACGA GCCCGACCAG
GGCTTCCGGC TCGGCGGCAG CATGCAGTCG GGTGTGCGGG CGAACGACGG CGAGGTGCCC
AGGGGCGCGG GGTACGACCC CGACGCCAAG ACCGAGGTGC TGGAGATCGA GCCGGTCGAC
TGGCTGGACA ACTGGCTCCC GGTGTACGGC AGGCCGAGGC GGATCGAGTC GCTCGAGGAC
GAGTGGCGGT TCGACCCGGA GCGGGAGATG CTCTACAGCC AGCAGCGGCG CGAGGTGGAC
CGGTACCGGT TGGAGACGGT GCTGGACACG CCCACCGACG AGCAGCTGCG GCAGGCCACC
GCGCTCGGCG AGGGGCCCGG CGGGGAGAAG ATCAACGAGG AGTACCTGGA CGCCCCCGGC
GTCGACCAGC GGGTGATCGA CCTGGCGGAG CAGGTCACCG CGTCCGCGCA GAACCCGTTC
GACCGGGCCA AGGCGCTGCA CGACTACTTC AAGGACCCGG CCAACGGGTT CCAGTACAAG
CTGGAGACGA AGGACGACTT GGCCTCGGGG GCGCTCGTCG ACTTCGTGTT CAACGGGAAG
ACCGGGTTCT GCGAGCAGTA CGCGACGGCG ATGGCGATCA TGGCGAGGAC GCTGGGGCTG
CCGTCGCGGG TGGCGGTGGG GTTCACCGCG GGCTTCCCGA GCGCGGAGTA CCAGACGATC
ACCACGGACG ACGCGCACGC GTGGGTGGAG ATCTACTTCG ACGGGTACGG CTGGATGACG
TTCGACCCGA CGCCGCTGAG CGACCGGGCG GTCGTGCCCC CGTACATCTC CGGCAACCGG
GTGGAGAACG AGGACGGGGC CAGCAGCTCG CAGGCCACGA CGACGACCAC GACGGCGGTG
CCGAGCTCGT CGGCGAACCC GTCGGCCTCC ACGTCCGCCG ACGCGGCGGC GCAGGGGCAG
CAGGACGACG GCGGGAACCG GGTGCCCGCG TGGCACCTGA TCGCGCTGGT GGGCGCGCTG
GCGCTGGCGG CCCTGCTGGC GGCGGTGGCG CTGCTGGGCA GGAGGCCGGG CGGTGGTGAG
CGGGCGGTGT CGGGCCGGGT GAAGCGCGTC CTGGTGGCGG GTGCGGCCGG GTCGGGCGTG
GCGGCGCTGG CGCTGACGGC GGCGCTGCTG TCGTGGTGGC TGGCGGCCGT CGTGGCGGTT
GGCGCGGTGG CCGCGGCGCC TGCGGCGCTG CGCGAGGCGA CCAGGCGCGC GAGGCTGCGC
AGGGTCGCGG CGCTGGGGCC GGACGCGGCG GGCGCGGCGT GGCAGGAGCT GATCGCGGAG
TCGCTGGACC GGGGCGCGGG CGTGCGGAGC ACGGAGACGG TCCGGGTGGC GGCGAGGCGG
TTGGTGCGGG AGCACAACCT GGACGAGCAG GGCAGGGACG GCCTGCGCGC GGTGGTGGGC
GCGGTGGAGC GCTCGTGGTA CAGCGCGAAC GGCGGCGCGG ACCCGACCCT GCCGACGGCG
GTGGACGAGG TCCGCCGGTC GTTGACCCGC AACGCGCCGT TGGCCTTGCG GGCGAAGGTG
CTGCCGAAGT CGGTGCTGCA GAAACCACCG GATGGCAAGG AGAGCTGA
|
|---|
| Protein sequence | MAGRGSAGGD WVVATTPAVA GLATLCTAMA LSSVLTGTLW VVYLGVAIAV IAGVGVLLRS
VRVPAPLVPF GQFLALACLL VTIFTRTGVL VVLPGPQSLG DLVGVLGAAL EEVQTGIPPV
PDSPAMRCLV MLAIGVVAVV VDTLAVAAAA PAASGLVLLC VFAVPVSLAD EMLPLWIFVL
GAAAFALLLA VDGQHRHSAW RGRLPRGAGV NSAPAATAVA GAAVVTALLA GLLSAPLVGT
VGRLPGTGEG GGTGKLGLEP MTELRGMLNR GQNKELFRVR DLPRQAYMRV ATLRAYEPDQ
GFRLGGSMQS GVRANDGEVP RGAGYDPDAK TEVLEIEPVD WLDNWLPVYG RPRRIESLED
EWRFDPEREM LYSQQRREVD RYRLETVLDT PTDEQLRQAT ALGEGPGGEK INEEYLDAPG
VDQRVIDLAE QVTASAQNPF DRAKALHDYF KDPANGFQYK LETKDDLASG ALVDFVFNGK
TGFCEQYATA MAIMARTLGL PSRVAVGFTA GFPSAEYQTI TTDDAHAWVE IYFDGYGWMT
FDPTPLSDRA VVPPYISGNR VENEDGASSS QATTTTTTAV PSSSANPSAS TSADAAAQGQ
QDDGGNRVPA WHLIALVGAL ALAALLAAVA LLGRRPGGGE RAVSGRVKRV LVAGAAGSGV
AALALTAALL SWWLAAVVAV GAVAAAPAAL REATRRARLR RVAALGPDAA GAAWQELIAE
SLDRGAGVRS TETVRVAARR LVREHNLDEQ GRDGLRAVVG AVERSWYSAN GGADPTLPTA
VDEVRRSLTR NAPLALRAKV LPKSVLQKPP DGKES
|
|---|
| |