| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5675 |
|---|
| Symbol | |
|---|
| ID | 8329882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 6691562 |
|---|
| End bp | 6692314 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644946113 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003103336 |
|---|
| Protein GI | 256379676 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.216475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCAG TCGTGTCCGA CGTCGGAACC CGGACCGCCG TGGAGGCGAC CGGCCTGGTC
AAGGTGTACG GCAAGGGCGA CACCGCGGTG CACGCGCTGG CCGGGGTCAC CGTCGCCTTC
GAGGCGGGCC GGTTCACCGC GATCATGGGC CCCTCGGGTT CCGGCAAGTC CACCCTCATG
CACTGCCTGG CGGGCCTGGA CGACGTGGAC GGCGGCCAGG TCCGCGTCGG CGGCACCGAG
ATCACCGGCC TGGGCGACAA GGACCTCACC AAGCTCCGCC GCGACCGGGT CGGGTTCGTC
TTCCAGTCGT TCAACCTCCT GCCGACGCTC ACCGCGGAGC AGAACATCCT GCTCGGCCTT
GAGCTGGCGG GCCGCAAGCC CGACCGGGAG TGGTTCGACA CCATCGTCGA GGTGCTCGGC
CTGCGCGACC GCCTCAAGCA CAAGCCGACC GAGCTGTCCG GCGGCCAGCA GCAGCGCGTG
GCCTGCGCCC GCGCCCTGGT CGCCCGGCCC GACGTGGTGT TCGCCGACGA GCCCACCGGC
AACCTGGACT CGCGCTCCGG CGCCGAGGTC CTGGACTTCC TGCGCATGTC GGTCCGCAAG
CTCGGCCAGA CCGTGATCAT GGTGACGCAC GACCCGGTCG CCGCCTCCTA CGCGGACCGC
GTGGTCCTGC TCGCCGACGG CCACCTCGCG GGCGACATCA CCGCCCCCAC CGCCGACAGC
GTCCTCGCCG CGCTCAAGAA CCTGGGGGCC TGA
|
|---|
| Protein sequence | MSAVVSDVGT RTAVEATGLV KVYGKGDTAV HALAGVTVAF EAGRFTAIMG PSGSGKSTLM
HCLAGLDDVD GGQVRVGGTE ITGLGDKDLT KLRRDRVGFV FQSFNLLPTL TAEQNILLGL
ELAGRKPDRE WFDTIVEVLG LRDRLKHKPT ELSGGQQQRV ACARALVARP DVVFADEPTG
NLDSRSGAEV LDFLRMSVRK LGQTVIMVTH DPVAASYADR VVLLADGHLA GDITAPTADS
VLAALKNLGA
|
|---|
| |