Gene Amir_5486 details

Gene Information

• Locus tag: Amir_5486
• ID: 8329692
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 6517722
• End bp: 6518399
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 644945926
• Product: beta-lactamase domain protein
• Protein accession: YP_003103150
• Protein GI: 256379490
• COG category: [R] General function prediction only
• COG ID: [COG0491] Zn-dependent hydrolases, including glyoxylases

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0000000686385
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGACGTAC TAGAGGACTA CACCGGCCAC GTCGAGCCGG GCGGCCCGGC GGCGCGCCGG 
GTGCTGGACG CGCTGACCAT CACGAAGGTG TCGGTCGGCC CGATGGACAA CAACGCGTAC 
CTGCTGGTGT GCCGCGCGAC GAACGAAGCG CTGCTCATCG ACGCCGCAGC CGACCCGGAG 
CGCCTGTCCG ACCTGGTCGG TCACGACGTG ACCAGGCCGA GGCTGAGGAC GGTCGTGACC 
ACCCACCAGC ACGGCGACCA CTGGGCGGCG CTGGGCGCGG TCGCGGGCGC GAACGGCTCG 
AACACCGCCG CGCACCCCTT GGACGCCGAG GTCCTGCCGG TCCCCCCGGA CTTCCTGGTG 
GAGCACGGCG ACACCCTGCA GGTGGGCGAG TCGACCCTGG AGGTGATCCA CCTCCGCGGC 
CACACGCCAG GCTCGATCGC CCTCCTGTAC CGCGACCCGA CCGGCCACCC CCACCTCTTC 
ACGGGCGACT CGCTGTTCCC CGGAGGCGTG GGCAGGACCA CCTCCCCGGA GGCGTTCACG 
AGCCTGCTGG ACGACGTCCA GTCCCGCCTC TTCGACGCCC TCCCGGACAA CACCTGGTTC 
TACCCCGGCC ACGGCGACGA CTCGACGCTG GGCGCAGAAC GCCCGAACCT GAACGAGTGG 
CGCTCCCGCG GCTGGTGA 

 

Protein sequence

MDVLEDYTGH VEPGGPAARR VLDALTITKV SVGPMDNNAY LLVCRATNEA LLIDAAADPE 
RLSDLVGHDV TRPRLRTVVT THQHGDHWAA LGAVAGANGS NTAAHPLDAE VLPVPPDFLV 
EHGDTLQVGE STLEVIHLRG HTPGSIALLY RDPTGHPHLF TGDSLFPGGV GRTTSPEAFT 
SLLDDVQSRL FDALPDNTWF YPGHGDDSTL GAERPNLNEW RSRGW