| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5467 |
|---|
| Symbol | |
|---|
| ID | 8329673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 6494601 |
|---|
| End bp | 6497432 |
|---|
| Gene Length | 2832 bp |
|---|
| Protein Length | 943 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644945907 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003103131 |
|---|
| Protein GI | 256379471 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAG AACCCGGCCG GGACGAGATC AAGCAGGCCG CCGAGCAGCA GTTCGCGCAG
GCCTACCACC TGCCGGAGGG CATGGCCAGG CACGAGGCGC TGGAGCGGGC GGCGCGGGCG
GCGGACGCCT GCGACCACCT GCCGCTGGCG GTGAGCTGCC GGATCGCGCT GCTGCGCTCG
GCGCACGACC TGAACCGCTA CGACCTGATG CTGGCCCCGT TCGCCTGGTG CGGCGCGGCC
GAGCGGCGCG ACCCCACGGC GTTCGACGAG TGGGAGACGC ACAACTACGA CTGGGCGCAC
AAGTGGATCG TCACCGGTCT GCTCGCCGAC CCCCGGTTCA GCCTGGAGCA GATCGGCTCG
GTGCTGGAGC AGCTGGCGAC CCGCTACCGG CAGCACGGCT TCTCGGCGCA GCCGGTGCAC
GGGGCGCGCA CCGAGCTGGC CGACCACGTC GGTGACGAGG CCGGTTACCG GGAGCACTTC
GCCCGCTACC TGGCGGCCGA GCGCGGCCCG CTCAGCGACT GCGAGGCGTG CGTGGTCGAG
GAGCAGGCCA GGCACCTGAT CTGGCAGGGC AGGCCCGCCG AGGCGATCGC GCACGCCGAG
CACCAGCTGG CCGAGGACAC CGGCTGCGCG GGCCAGCCGC AGGGCATCCT GACCACGCTG
ACGCCCGCGT TCGTCGAGGT GGGCGACCTG GAGCGGGCCC GCGAGGCGCA CGTGGTGGCG
CACCGCGCGA TCCGCGACGA CCTGGTGACC GGGTACCTGG ACGACCACCT GGTGTTCTGC
GCGACCTCGG GCAACGTGGA GCGCGGCGTC GAGCTGCTCA AGCGGCACCT GCACCGGGTG
CACTCGTCCA CGAACCCCGC GCAGGCCATG CGGTTCTCGG CGGGCGCGGC GCTGCTGCTG
GACCGGCTGG ACCGGCCGGA GGAGTTCGCG GTGCCGCGCG ACGGGCGCAC CGAGGTGCTG
TCCGCGGACG AGCTGCGCGA GTTCCTGCGG GCGCAGGCGC TGGAGATCGC GGCCCGCTTC
GACGAGCGCA ACGGCAGCGA CGCGGTGAGC GCGCGGATCC GCAGGACGCT GGCGCTGGCC
GACACCGAGC CGGTGCCGCT GGCGGTGCCG ACGGCGGCGG ACGCGCAGAT CGACGCGCCG
GTCGAGTCCG CTGTGGACGA GGAGGTGCTG TCCGACCCGG TGGAGCTGGC CGAGCGGGCG
CTGAAGGCGT TCTCCGGCAA CGACTTCCTC ACCGGGATGC GGCTGCTGCG CTCGCTGCCC
GCCGACCTGG ACGCGCTGCT GCCCGACGTG CTGGCGGCGC GGGTCGCGGC CCGCAGGGCG
CTCGCCTCCA AGCCGGGCCT GGACGACGAG GCCGCGCTGG CGGCGTTCCG GGCGGCCGTG
GCGCGGCTGG AGGAGCTGGG CGAACCGGAC CTGGCGGTGC GCTACCGCAG CCGGGGCGCC
GGCCGCTGGT CCGAGCTGAC CGGCGGGCTG GAGGCGGCGG TCGCCGAGGC GCGCGAGTGC
GTCGCGCTGG CCGCGACCCC CAGGACGCTG GTGCTGGCGA AGCTGGTGCT GGCCGAGCTG
GTGGAGCGCT CGGACGACGG GCTGGTGCCG GAGGCGCTGG AGCTGGTCGA GCAGGCGCGC
GAGCTGGCCG AGCCGGACGC GGACCTGCTG GTGCGGGTGC GCTGCGCGCG GGCCGAGCAC
CTGGCCAGCG CGGACCGCCT GGAGGAGGCG CGGGAGATCG CCGAGGCGCT GCTGGCCGAG
GACCCGCCGC CGTCGGTGCG GTTCAACGCG CTGCGGCTGC TCGGGCACCT GGCCGTGCTG
CGCGAGGACG GTGACGCGGC GCTGGAGGCG GCGGACGCGC TGGTCGCCGC GTCGGGGTCG
GTGCGCGGGC CGTGGACGGT CGAGGCGCAC CAGCGGCGGG TCTCGCTGGT GGAGCACCTG
GGCCGGTACG CGGACCGGAT GGGCGCGCTG CGCGAGGCCG TCGCGGTGAC CCGCGAGCTG
GGCAGCGAGC AGGAGGTCGT GTGGGCGTGC TTCGCGCTCG CGGGCGGTTA CCTGAACGTG
CGGCGGCCGA TCGAGGCGGC CGAGGCGCTG GAGGAGGCGT TGCGGATCCT GGAGGCGGGC
GACCTGCCGC CGTCCGACTC GGTGCCGGTG CTGTTCCGGC TCGGCAAGGT GTGCACGCAG
CTCGGCGAGA CCGACGCGGC GCTGCGGCAC CTGGAGGCCG CGCTCGCGGC GGCCCCCGAG
GAGGAGCTGC TGCAGCGGGC CGTGACGCTG GACGCGCTCG GCGCGGCGCG GTCGCAGGCC
GGTCAGGAGG TCGAGGGCGC CGAGGCGTAC GAGGGCGCGG CGCGGCTGTG GACCGAGATC
GGCGACGCCT ACGAGGCGGC GGCGTCCTGG ATGGAGGCGG CGAGCACCCG GCCGAACGAC
GACGTGGCCG AGTCGTTCCA CGCGGTCTCG CACGCCGAGG GGCTGCTGGA GCACGTGGAC
GACGAGGAGC AGGTGCTCAT GCTGCGCACC AGGATCGCCG CCATCCGCGG GTTCCTGCAC
GCGCAGGAGG AGGACTGGGC GAAGGCGCTG GAGCACAACG GCGTCGCCGA GGAGCTGGCT
GACCAGTCCG GCGACGAGCA CCGCAGGCTG TTCATGATCA CCAGGGGCGC GCGGTTCCTG
CTGGCGGCCG AGGACCCGGA GAACGCCGAG GCCGAGGCGA GGCGCGCGGG CGCCCTGGTG
ACCGACCGGA CGCCGCCGCC GATCATCGGC GACCTGGCGG GGGCGCTGGA GGAGGCGCTG
CGCGCGCAGG ACAAGCAGGT CGTCGGCGAC GCGCTGCTGC GGTCGTTGAA CGCCAGGCTG
AACGACGAGT GA
|
|---|
| Protein sequence | MTEEPGRDEI KQAAEQQFAQ AYHLPEGMAR HEALERAARA ADACDHLPLA VSCRIALLRS
AHDLNRYDLM LAPFAWCGAA ERRDPTAFDE WETHNYDWAH KWIVTGLLAD PRFSLEQIGS
VLEQLATRYR QHGFSAQPVH GARTELADHV GDEAGYREHF ARYLAAERGP LSDCEACVVE
EQARHLIWQG RPAEAIAHAE HQLAEDTGCA GQPQGILTTL TPAFVEVGDL ERAREAHVVA
HRAIRDDLVT GYLDDHLVFC ATSGNVERGV ELLKRHLHRV HSSTNPAQAM RFSAGAALLL
DRLDRPEEFA VPRDGRTEVL SADELREFLR AQALEIAARF DERNGSDAVS ARIRRTLALA
DTEPVPLAVP TAADAQIDAP VESAVDEEVL SDPVELAERA LKAFSGNDFL TGMRLLRSLP
ADLDALLPDV LAARVAARRA LASKPGLDDE AALAAFRAAV ARLEELGEPD LAVRYRSRGA
GRWSELTGGL EAAVAEAREC VALAATPRTL VLAKLVLAEL VERSDDGLVP EALELVEQAR
ELAEPDADLL VRVRCARAEH LASADRLEEA REIAEALLAE DPPPSVRFNA LRLLGHLAVL
REDGDAALEA ADALVAASGS VRGPWTVEAH QRRVSLVEHL GRYADRMGAL REAVAVTREL
GSEQEVVWAC FALAGGYLNV RRPIEAAEAL EEALRILEAG DLPPSDSVPV LFRLGKVCTQ
LGETDAALRH LEAALAAAPE EELLQRAVTL DALGAARSQA GQEVEGAEAY EGAARLWTEI
GDAYEAAASW MEAASTRPND DVAESFHAVS HAEGLLEHVD DEEQVLMLRT RIAAIRGFLH
AQEEDWAKAL EHNGVAEELA DQSGDEHRRL FMITRGARFL LAAEDPENAE AEARRAGALV
TDRTPPPIIG DLAGALEEAL RAQDKQVVGD ALLRSLNARL NDE
|
|---|
| |