Gene Amir_5406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5406 
Symbol 
ID8329608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp6419935 
End bp6420552 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content78% 
IMG OID644945843 
ProductThiJ/PfpI domain protein 
Protein accessionYP_003103071 
Protein GI256379411 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.491106 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGCCC AGTTCGTCCT GTTCGACGGC TTCGACCCGC TCGACGTCAT CGCCCCCTAC 
GAGGTGCTCG GGGCCGGCGC CGCCCTGGGC GCGGACACCG CGTTCACCGT CGAGTTCGCC 
TCGGCGGAGG GGGAGCGGCT GGTGCCCAGC GGGGTGCCGG GGATCTCCCT CCGCGCCGTC 
GCGGCCGTCG ACGCCGGGCG CGCCGACCTG GTCGTGGTGC CCGGCGCGGT CGTGCTCACC 
GAGGACGACG TCCGCCGGGT GTTCGGCGCG GCGCTGGCCA CCCCGCTCGC CGGCGCGCTC 
GCCACCGCCG TCGGGCGCGA CGGGGTCGTC GTGGCCACGG TGTGCGGCGG CTCGGTGCTG 
CTCGGGATGG CCGGGCTGCT CGCCGGGCGC ACCGCCACCA CCAACTCCGG CGCCACCGCC 
CTGCTCGGGT CGCTCGGTGC GCGGGCCGTC GAGGCGCGGG TGGCCGACGA CGGCGACCTG 
GTCACGGCGG GCGGCGTCAC GTCCGGGCTC GACCTCGGGC TGCACCTGCT CGACCGGTTC 
CTCGGCCCGG ACGCGGCGCT GGCCGCCGAG CGGCTCTTCC ACCACGAGCG GCGCGGCACC 
ACCTGGACCG CGCGGTGA
 
Protein sequence
MHAQFVLFDG FDPLDVIAPY EVLGAGAALG ADTAFTVEFA SAEGERLVPS GVPGISLRAV 
AAVDAGRADL VVVPGAVVLT EDDVRRVFGA ALATPLAGAL ATAVGRDGVV VATVCGGSVL 
LGMAGLLAGR TATTNSGATA LLGSLGARAV EARVADDGDL VTAGGVTSGL DLGLHLLDRF 
LGPDAALAAE RLFHHERRGT TWTAR