Gene Amir_5369 details

Gene Information

• Locus tag: Amir_5369
• ID: 8329571
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 6382614
• End bp: 6383333
• Gene Length: 720 bp
• Protein Length: 239 aa
• Translation table: 11
• GC content: 76%
• IMG OID: 644945806
• Product: putative transmembrane anti-sigma factor
• Protein accession: YP_003103034
• Protein GI: 256379374
• TIGRFAM ID: [TIGR01168] Gram-positive signal peptide, YSIRK family

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACCGGGA CTCACGACAG CAGCCGCGTC CCGCAACTGC TCGGCGCGCA CGTGCTGGGA 
GTGCTGGAGG AGGCGGAGGT GCGCGAGGTG GAAGCCCACT TGGCGACCTG CCCGACCTGC 
CGCGACGAGG TGAACGGGCT GAGGGCGATG GAGAAGGCGC TGGGCGAGGT CCCGCCCGAG 
GCGCTGCTGG ACGGACCACC GGACGGCGGC GACCTGCTGC TGCGGCGCAC GCTGCGGCAG 
GTCGGGCAGG AGCGCCAGGT CCGCGCCTCG CGCAGGCGGG TCGGCACGGG CGTGGCCGCC 
GCCGCGGTCG TCGCGGTCGT GCTCGGCGGC GGCTTCGCGG TCGGCCGGGG CACCGCCCCC 
ACCGACGACG CCGCCCTCTC GACCCCCACG CCCGTCCCGT CCGCGCCACC GTCCGGCACC 
CGCCTCGGCG CCGGGGCCGA CCAGGCCACC GGTGCCCGGA TGACCGTCCA GGTCAGGCCC 
GCCGCGGGCT GGGTCAGGGT CAACGCCTCG GTCGCGGGCA TCCCGAAGGG CGAGCAGTGC 
CGCATCGTCG TCGTGGCCAA GGACGGCACG ACGCAGGACG CGGGCAGCTG GCTCGTCTCC 
GAGGCAGGGG AGAAGGACGG CACCACCCTG GACGGCTCGG CCCTGATCGC CCCCGAGGAC 
GTCGCCGCCG TCGAGGTGCG CGACTTCGAC GGCAGGACGT TCGTGTCCGT CCCAGTGTGA 

 

Protein sequence

MTGTHDSSRV PQLLGAHVLG VLEEAEVREV EAHLATCPTC RDEVNGLRAM EKALGEVPPE 
ALLDGPPDGG DLLLRRTLRQ VGQERQVRAS RRRVGTGVAA AAVVAVVLGG GFAVGRGTAP 
TDDAALSTPT PVPSAPPSGT RLGAGADQAT GARMTVQVRP AAGWVRVNAS VAGIPKGEQC 
RIVVVAKDGT TQDAGSWLVS EAGEKDGTTL DGSALIAPED VAAVEVRDFD GRTFVSVPV