Gene Amir_5315 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5315 
Symbol 
ID8329517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand
Start bp6319267 
End bp6322164 
Gene Length2898 bp 
Protein Length965 aa 
Translation table11 
GC content78% 
IMG OID644945754 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003102982 
Protein GI256379322 
COG category[R] General function prediction only 
COG ID[COG3899] Predicted ATPase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00819594 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGACCC GCGCGCCGGT GGTGATCGGG CGCGGCGAGG AGCTCACCGC GTTGGAGCGG 
GCGTTGGCCG GTGCCCTGGG CGGGGACGGC GGGGCGCTGT TCCTCGTCGG CGAGGCAGGC
ATCGGGAAGA GCCGGTTGGC CAGGGTCGCG GTGGGGCGGG CGTTCGACCT GGGGATGCGG
GTGCTGCGCG GGCGCGGCAG CACGATCGGG CCGCTCGTGC CGTTCCGGGC GTTGACCGAG
GCGCTGATGT CGTTGCTGCG CGGCGGGGAC GGGCCCGACC CCGCGCTGCT CGGGCCCTAC
CAGGGGGCGC TCGGGCGGCT GGTGCCCGAG TGGGCCGGGG AGCCCGACGA GGGGCGGTCG
CTGGTCGTGC TGGCCGAGGC GGTGCTGCGG TTGCTCGCGG TGGCGGGGCG GGAGCGGCCC
TGCCTGCTGG TGCTGGAGGA CCTGCACGAC GCGGACGCGG AGACGCTCGC CGTCGTCGAC
TACCTCGTCG ACAACCTCGC CGGGTCGCCG GTGCTGCTGC TCGTCACCGC GCGGCCCGAG
CCCAGCCCCG CCCTGGACGT GCTGCGGCCC GCCGCGCAGC GCGGGTCCGG CGAGCTGCTC
GAACCCCGCA GGCTCACCGA GCCGCAGGTG CGCGAGATGG CCGCCTCCTG CCTCGAGACC
CCGCCCGACC GGGTGCCCGA CGAGGTCGCC AAGCGGCTGT GGAACGACAG CGCGGGCATC
CCGTTCGTGG TCGAGGAGAT GCTGCACGGC ATGGTCAGCG GCGGTCTGCT CGTGCCCGGC
GCCGACGGGT GGCGGGTGGT CGGGGAGCTG CGGATCGGGG TGCCCACCGC GCTGGTGCGG
GCCATCGCGC ACCGCACCGA CCGGCTCGGG CCGCGCGGGC GCGAGCTGCT GTCGGCCGCC
GCCGTCCTCG GCCACCGGTT CTCGCTGACC GTCCTGCGCC GCATCACCGG CCTGGACGAC
CGGGCGCTGC TCGGGCACCT GCACGCGGGC GTCGCCGCGC AGCTGGTCAC CCCGGACGAG
CCGGTGCCCG ACTGGTACGC CTTCCGGCAC CCGCTCACCG CCGAGGCCCT GCTCGCCCGC
CTCGCCCCCG GCGAGCGGGC CGAGCTGTCC CGGCGCGCCG CCGACGCCGT CGAGGCGCTG
CACCCCGGCC TGCCCGGCGA GTGGTGCCCG CTGGTGGCCT CGCTGCGCCT GGACGCGGGC
GAGCAGGCCG AGGCGGGCGC CCTGCTGGCC GAGGCGGGGC GGCGGGCGCT CGCGGACGGG
GCGGTCGGGT CGGCGGTCCG GCTGCTCGAC CACGCGCACC GGCTGCTGTC CGGCCCGCTG
GACGCCGAGG TGCACGCCGA CGTGCTGGAG TCGCTGCTGC CCGCGCTCGG CGAGGCCGGG
CAGTTCGAGC GGGCGTTCGC GCTGGTCGGG CCGCTGGCCG AGCTGGGCCC CCGGCTGGAC
CGGGTGCGGT GGGCGCGGCT GTGCACGCGG CTGGCGCGGG TGGCGTACCT GGCCGGGCGG
TGGGAGCTGG GGGCCGCGCA GGTCGACGAG GCCCGCGCGC TGCTCGGCGC GGACGGCCCG
GTGGCCGAGG TGGCGCTGGT GGACTCGGTG GCGGCGTCGC TGGCGCTCCA GTCGCCGGGG
CCGGACCGGG TGGAGCGGGC GCGGGAGCTG GCGCTGCGGG CCGCCGAGCG CAGCCCTGAC
CCGGTGGTGC GCTGCGAGGC CAGGCAGCTG CTGGGCATCC TGGCGCGCGA GCGCGACGTG
GGCGAGGCGA CCGAGCACTT CGTGACGGCC CAGCGCATCG CGGAGGAGCA CCGGCTGCCG
GTGCAGCGCA GCTACGCGGT GGTGCGCCGG GCCGGGCTGG CGTGGCTGGC GGACGCCTCG
GTCTCCGGGC TGCTCAGGGC GCGGGCGGAG GCGCTCGGCG TCGGGGCGAT CTTCGTGGCG
TGCAACGTGG ACGCGATCCT GGCGCTGGAC GCGGTGCTGC GCGGCCGGTA CGCGGAGGCC
GACGAGCTGG TGGAGCGGTG CGCGGAGGAC ACCGCGCGGT TCCAGCTGCT GGGGATCTCG
GGCTACGTGC TGATGACCCG CGCCACGGCC GCGGCGCACC GGGGGCGGCG GGCGGAGATG
GCGGCGGCGC TGGAGCGGTT CGACGCCGTG GGCGGGGCGG GGGCGCAGGA GCGACCGCTG
TGCTTCGGGC TGGCCAGGGC GTTCTGCGCG CTGCTGGAGG AGGACCGGGG GCTGGCGGCG
CGGGAGCTGG CGGTCGCCGA GGAGCTGGAG CTGGCGAGCC CGTCCACGTT CCACCTGTCC
GGCACGCACG GGCTGCGGCT GCTGCTGGGC GCGCTGGACG GGACCGTGGA CCTGGCCGGG
TGCGCCGGGG TGGTCGGGGG CGCGGTCGGC GGGATGCGGT GGAACCGGGT GTTCGGCGGG
TACGCGCTGG CGGTGCTGCT GGGGCGGGCC GGGCGCGGGG ACGAGGCGCT GGCGGCGTTC
GCGTCCGCGC GGGAGGCGGG CGAGGTGTTC CCGCTGGCGG ACGGGCTGGG GCTGCGGCTG
GCGGCGGAGG CGGCGGTGCG GGACGGCTGG GGTGAGCCGG TCGGGTGGTT GCGGGAGGCC
GAGGAGCGGT TCCACGGGTC CGGGTCGTCG GCGGTGGCCA GCGCGTGCCG GGGCCTGCTG
CGGGCGGCCG GGGCGCCGGT GCAGCAGCGG CGCAGCGGCA GCGACCTGGT GCCCAGGGAG
CTGCGGGCGC TGGGGGTGAC GGTGCGGGAG TTCGAGGTGT TCCGGCTGGT CGGGGTGCGG
TTGGGGAACA AGGCGATCGC GCACCGGCTG CACATCTCGC CCCGGACGGT GGAGAAGCAC
GTGGCCAGCC TGCTCGGCAA GACCGGGCGG GGCGACCGGG AGGGGCTCAG CAGCTTCGCG
GCGGGGCTGG TCGGGTGA
 
Protein sequence
MQTRAPVVIG RGEELTALER ALAGALGGDG GALFLVGEAG IGKSRLARVA VGRAFDLGMR 
VLRGRGSTIG PLVPFRALTE ALMSLLRGGD GPDPALLGPY QGALGRLVPE WAGEPDEGRS
LVVLAEAVLR LLAVAGRERP CLLVLEDLHD ADAETLAVVD YLVDNLAGSP VLLLVTARPE
PSPALDVLRP AAQRGSGELL EPRRLTEPQV REMAASCLET PPDRVPDEVA KRLWNDSAGI
PFVVEEMLHG MVSGGLLVPG ADGWRVVGEL RIGVPTALVR AIAHRTDRLG PRGRELLSAA
AVLGHRFSLT VLRRITGLDD RALLGHLHAG VAAQLVTPDE PVPDWYAFRH PLTAEALLAR
LAPGERAELS RRAADAVEAL HPGLPGEWCP LVASLRLDAG EQAEAGALLA EAGRRALADG
AVGSAVRLLD HAHRLLSGPL DAEVHADVLE SLLPALGEAG QFERAFALVG PLAELGPRLD
RVRWARLCTR LARVAYLAGR WELGAAQVDE ARALLGADGP VAEVALVDSV AASLALQSPG
PDRVERAREL ALRAAERSPD PVVRCEARQL LGILARERDV GEATEHFVTA QRIAEEHRLP
VQRSYAVVRR AGLAWLADAS VSGLLRARAE ALGVGAIFVA CNVDAILALD AVLRGRYAEA
DELVERCAED TARFQLLGIS GYVLMTRATA AAHRGRRAEM AAALERFDAV GGAGAQERPL
CFGLARAFCA LLEEDRGLAA RELAVAEELE LASPSTFHLS GTHGLRLLLG ALDGTVDLAG
CAGVVGGAVG GMRWNRVFGG YALAVLLGRA GRGDEALAAF ASAREAGEVF PLADGLGLRL
AAEAAVRDGW GEPVGWLREA EERFHGSGSS AVASACRGLL RAAGAPVQQR RSGSDLVPRE
LRALGVTVRE FEVFRLVGVR LGNKAIAHRL HISPRTVEKH VASLLGKTGR GDREGLSSFA
AGLVG