Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amir_5315 |
Symbol | |
ID | 8329517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Actinosynnema mirum DSM 43827 |
Kingdom | Bacteria |
Replicon accession | NC_013093 |
Strand | + |
Start bp | 6319267 |
End bp | 6322164 |
Gene Length | 2898 bp |
Protein Length | 965 aa |
Translation table | 11 |
GC content | 78% |
IMG OID | 644945754 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003102982 |
Protein GI | 256379322 |
COG category | [R] General function prediction only |
COG ID | [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00819594 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAGACCC GCGCGCCGGT GGTGATCGGG CGCGGCGAGG AGCTCACCGC GTTGGAGCGG GCGTTGGCCG GTGCCCTGGG CGGGGACGGC GGGGCGCTGT TCCTCGTCGG CGAGGCAGGC ATCGGGAAGA GCCGGTTGGC CAGGGTCGCG GTGGGGCGGG CGTTCGACCT GGGGATGCGG GTGCTGCGCG GGCGCGGCAG CACGATCGGG CCGCTCGTGC CGTTCCGGGC GTTGACCGAG GCGCTGATGT CGTTGCTGCG CGGCGGGGAC GGGCCCGACC CCGCGCTGCT CGGGCCCTAC CAGGGGGCGC TCGGGCGGCT GGTGCCCGAG TGGGCCGGGG AGCCCGACGA GGGGCGGTCG CTGGTCGTGC TGGCCGAGGC GGTGCTGCGG TTGCTCGCGG TGGCGGGGCG GGAGCGGCCC TGCCTGCTGG TGCTGGAGGA CCTGCACGAC GCGGACGCGG AGACGCTCGC CGTCGTCGAC TACCTCGTCG ACAACCTCGC CGGGTCGCCG GTGCTGCTGC TCGTCACCGC GCGGCCCGAG CCCAGCCCCG CCCTGGACGT GCTGCGGCCC GCCGCGCAGC GCGGGTCCGG CGAGCTGCTC GAACCCCGCA GGCTCACCGA GCCGCAGGTG CGCGAGATGG CCGCCTCCTG CCTCGAGACC CCGCCCGACC GGGTGCCCGA CGAGGTCGCC AAGCGGCTGT GGAACGACAG CGCGGGCATC CCGTTCGTGG TCGAGGAGAT GCTGCACGGC ATGGTCAGCG GCGGTCTGCT CGTGCCCGGC GCCGACGGGT GGCGGGTGGT CGGGGAGCTG CGGATCGGGG TGCCCACCGC GCTGGTGCGG GCCATCGCGC ACCGCACCGA CCGGCTCGGG CCGCGCGGGC GCGAGCTGCT GTCGGCCGCC GCCGTCCTCG GCCACCGGTT CTCGCTGACC GTCCTGCGCC GCATCACCGG CCTGGACGAC CGGGCGCTGC TCGGGCACCT GCACGCGGGC GTCGCCGCGC AGCTGGTCAC CCCGGACGAG CCGGTGCCCG ACTGGTACGC CTTCCGGCAC CCGCTCACCG CCGAGGCCCT GCTCGCCCGC CTCGCCCCCG GCGAGCGGGC CGAGCTGTCC CGGCGCGCCG CCGACGCCGT CGAGGCGCTG CACCCCGGCC TGCCCGGCGA GTGGTGCCCG CTGGTGGCCT CGCTGCGCCT GGACGCGGGC GAGCAGGCCG AGGCGGGCGC CCTGCTGGCC GAGGCGGGGC GGCGGGCGCT CGCGGACGGG GCGGTCGGGT CGGCGGTCCG GCTGCTCGAC CACGCGCACC GGCTGCTGTC CGGCCCGCTG GACGCCGAGG TGCACGCCGA CGTGCTGGAG TCGCTGCTGC CCGCGCTCGG CGAGGCCGGG CAGTTCGAGC GGGCGTTCGC GCTGGTCGGG CCGCTGGCCG AGCTGGGCCC CCGGCTGGAC CGGGTGCGGT GGGCGCGGCT GTGCACGCGG CTGGCGCGGG TGGCGTACCT GGCCGGGCGG TGGGAGCTGG GGGCCGCGCA GGTCGACGAG GCCCGCGCGC TGCTCGGCGC GGACGGCCCG GTGGCCGAGG TGGCGCTGGT GGACTCGGTG GCGGCGTCGC TGGCGCTCCA GTCGCCGGGG CCGGACCGGG TGGAGCGGGC GCGGGAGCTG GCGCTGCGGG CCGCCGAGCG CAGCCCTGAC CCGGTGGTGC GCTGCGAGGC CAGGCAGCTG CTGGGCATCC TGGCGCGCGA GCGCGACGTG GGCGAGGCGA CCGAGCACTT CGTGACGGCC CAGCGCATCG CGGAGGAGCA CCGGCTGCCG GTGCAGCGCA GCTACGCGGT GGTGCGCCGG GCCGGGCTGG CGTGGCTGGC GGACGCCTCG GTCTCCGGGC TGCTCAGGGC GCGGGCGGAG GCGCTCGGCG TCGGGGCGAT CTTCGTGGCG TGCAACGTGG ACGCGATCCT GGCGCTGGAC GCGGTGCTGC GCGGCCGGTA CGCGGAGGCC GACGAGCTGG TGGAGCGGTG CGCGGAGGAC ACCGCGCGGT TCCAGCTGCT GGGGATCTCG GGCTACGTGC TGATGACCCG CGCCACGGCC GCGGCGCACC GGGGGCGGCG GGCGGAGATG GCGGCGGCGC TGGAGCGGTT CGACGCCGTG GGCGGGGCGG GGGCGCAGGA GCGACCGCTG TGCTTCGGGC TGGCCAGGGC GTTCTGCGCG CTGCTGGAGG AGGACCGGGG GCTGGCGGCG CGGGAGCTGG CGGTCGCCGA GGAGCTGGAG CTGGCGAGCC CGTCCACGTT CCACCTGTCC GGCACGCACG GGCTGCGGCT GCTGCTGGGC GCGCTGGACG GGACCGTGGA CCTGGCCGGG TGCGCCGGGG TGGTCGGGGG CGCGGTCGGC GGGATGCGGT GGAACCGGGT GTTCGGCGGG TACGCGCTGG CGGTGCTGCT GGGGCGGGCC GGGCGCGGGG ACGAGGCGCT GGCGGCGTTC GCGTCCGCGC GGGAGGCGGG CGAGGTGTTC CCGCTGGCGG ACGGGCTGGG GCTGCGGCTG GCGGCGGAGG CGGCGGTGCG GGACGGCTGG GGTGAGCCGG TCGGGTGGTT GCGGGAGGCC GAGGAGCGGT TCCACGGGTC CGGGTCGTCG GCGGTGGCCA GCGCGTGCCG GGGCCTGCTG CGGGCGGCCG GGGCGCCGGT GCAGCAGCGG CGCAGCGGCA GCGACCTGGT GCCCAGGGAG CTGCGGGCGC TGGGGGTGAC GGTGCGGGAG TTCGAGGTGT TCCGGCTGGT CGGGGTGCGG TTGGGGAACA AGGCGATCGC GCACCGGCTG CACATCTCGC CCCGGACGGT GGAGAAGCAC GTGGCCAGCC TGCTCGGCAA GACCGGGCGG GGCGACCGGG AGGGGCTCAG CAGCTTCGCG GCGGGGCTGG TCGGGTGA
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Protein sequence | MQTRAPVVIG RGEELTALER ALAGALGGDG GALFLVGEAG IGKSRLARVA VGRAFDLGMR VLRGRGSTIG PLVPFRALTE ALMSLLRGGD GPDPALLGPY QGALGRLVPE WAGEPDEGRS LVVLAEAVLR LLAVAGRERP CLLVLEDLHD ADAETLAVVD YLVDNLAGSP VLLLVTARPE PSPALDVLRP AAQRGSGELL EPRRLTEPQV REMAASCLET PPDRVPDEVA KRLWNDSAGI PFVVEEMLHG MVSGGLLVPG ADGWRVVGEL RIGVPTALVR AIAHRTDRLG PRGRELLSAA AVLGHRFSLT VLRRITGLDD RALLGHLHAG VAAQLVTPDE PVPDWYAFRH PLTAEALLAR LAPGERAELS RRAADAVEAL HPGLPGEWCP LVASLRLDAG EQAEAGALLA EAGRRALADG AVGSAVRLLD HAHRLLSGPL DAEVHADVLE SLLPALGEAG QFERAFALVG PLAELGPRLD RVRWARLCTR LARVAYLAGR WELGAAQVDE ARALLGADGP VAEVALVDSV AASLALQSPG PDRVERAREL ALRAAERSPD PVVRCEARQL LGILARERDV GEATEHFVTA QRIAEEHRLP VQRSYAVVRR AGLAWLADAS VSGLLRARAE ALGVGAIFVA CNVDAILALD AVLRGRYAEA DELVERCAED TARFQLLGIS GYVLMTRATA AAHRGRRAEM AAALERFDAV GGAGAQERPL CFGLARAFCA LLEEDRGLAA RELAVAEELE LASPSTFHLS GTHGLRLLLG ALDGTVDLAG CAGVVGGAVG GMRWNRVFGG YALAVLLGRA GRGDEALAAF ASAREAGEVF PLADGLGLRL AAEAAVRDGW GEPVGWLREA EERFHGSGSS AVASACRGLL RAAGAPVQQR RSGSDLVPRE LRALGVTVRE FEVFRLVGVR LGNKAIAHRL HISPRTVEKH VASLLGKTGR GDREGLSSFA AGLVG
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