Gene Amir_5254 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_5254 
Symbol 
ID8329456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp6252277 
End bp6252792 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content70% 
IMG OID644945693 
ProductShikimate kinase 
Protein accessionYP_003102921 
Protein GI256379261 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.12338 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGCCCGA GGTTCGTCGT CCTGGGCCCG CCCGGCGGCG GCAAGACGAC GGTCGGCGTC 
CTGCTGGCCG AACACCTGGG CGTCGGCTTC CGCGACACCG ACGACGACAT CGTCGAGTCG 
CAGGGCAAGC CCATCTCGGA CATCTTCACC ACGGACGGCG AACCGGTGTT CCGCGCGCTG 
GAAGAAGCCG CGGTCGCGAA GGCCCTGTCC GAGTACGAGG GCGTCCTGTC CCTGGGCGGC 
GGCGCGATCC TGTCCGAGCG CACCAGGGAG CTCCTGGCGG ACCACACCGT GGTCTTCCTG 
AACGTCGGCA TGGCGGAGGG CGTCCGCAGA ACGGGCCTCT CCAGCGCCCG CCCCCTCCTG 
GCAGGCGTGA ACCCCCGCGC GACGTACAAG GCCCTCCTGG AAGCCAGGCT CCCCCTGTAC 
CGCGAGGTGG CGAAGATCGA GGTGCTCACG GACGCCCTCA CCCCGGAACA AGTGGTCTCC 
ACGATCCTCA CCGCCCCCGA GGCCACCAAC TCCTGA
 
Protein sequence
MSPRFVVLGP PGGGKTTVGV LLAEHLGVGF RDTDDDIVES QGKPISDIFT TDGEPVFRAL 
EEAAVAKALS EYEGVLSLGG GAILSERTRE LLADHTVVFL NVGMAEGVRR TGLSSARPLL 
AGVNPRATYK ALLEARLPLY REVAKIEVLT DALTPEQVVS TILTAPEATN S