| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_5012 |
|---|
| Symbol | |
|---|
| ID | 8329210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 5970511 |
|---|
| End bp | 5971992 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 78% |
|---|
| IMG OID | 644945449 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_003102681 |
|---|
| Protein GI | 256379021 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGGGCG GACCGGGGTT CGGCGGGCTC GTGGCGGTGG TGCTCGGGGC CGCCGCGCTG
GTCGCCGGGA CCGCCGCCAG CGGGGTGCTG GGCGAGACCG GCTCCACCGC GCTCGACGAC
CTCGCGCAGC TCGCCGCCGG GCTGTTCGCC GCCACCGCGT GCCTGGTCAC GGCCCGGCGC
GCGCACGGCC CCGACCGCCG GTGGCGGGTG CTGCTCGGGC TGGGCGCGCT GAGCTGGTCG
GCCGGGCAGG CCGCGTGGAC GTGGCAGCAG CTCGTCCTGG GCCGCGCCGT CCCCTCCCCC
ACGGTCGCCG ACGCCGGGTA CCTCGGGCTG GTGCCGTTCG CGCTGGCCGC GCTGCTCGTG
CTCGGCGGGC ACCGCGCGAC GCCGCCGCCC GAGGTGCGCA CGCCGCTGGT GCCGCCGCTC
GACGGGCTGA TCGTCGCGGG CTCGCTGTTC CTGCTGACCT GGTCCTCGTC GCTGGGCGCG
CTGGTGGCGC GCGGCGTCCC CGACCCGGTG GCGTTCCTGG TCGCCGTGGC CTACCCGGTG
ACCGACCTGG TGCTGCTCGT GGTCGTGGTG GTGCTCGCCG CCGGGCGGGA CGTGGTGCTC
CGGTCGCAGC TGCGCCTGAT CGGGCTGGGC CTGGCCGGGC TGGCGGTGTC CGACGGCACG
TTCGCGTACC TGGTCAGCGC GCAGGCCCCG GCCGTGCCGC CGCTGGCCAA CGCCGGGTTC
ACGCTCGGCC CCGCGCTGCT CGGGCTGGCC GCGCTCGCCC CGCCGCCCGC CGACCGGGGC
GAGGCGCGCG CGTCCGCCGG TCCGCGCCGA ACGCACCTGC TGCTGCCGTA CCTGCCGCTG
CTGCTGAGCT GGGCGGTGGT GCTGCACCGG ACCGCGAGCG GCACGGCGGG CGAGCTGGAC
GGGGTGGAGG TGGCGTGCGG GTTCACCGTG TTCGGGGCGG TGGTGGCGCG GCAGCTGGTC
GCCCTGGTCG CGAACACCCG GCTCGCGGCG CTGCTGCGCG CGTCCGAGCG GGAGCTGGCG
CACCGGGCGA CGCACGACCC GCTGACCGGG CTGGCGGGGC GGGCGCTGTT CGAGCGCAGG
CTGGCCGAGG CGGTGGCGGA GCACCAGGTC GAGGGAACCC CGTTCGGGGT GCTCTTTGTG
GACCTGGACC GGTTCAAGGC GGTGAACGAC ACGGAGGGTC ACGCCAGCGG GGACGCGCTG
CTCGGGCGGG TGGCCGGGCA CCTGCGGGCG TGCGTGCGGG ACGTGGACGT GGTGGCGCGG
CTGGGCGGCG ACGAGTTCGC GGTGCTGATC ACCGGGGCGC AGGACCCGGA GGCGGTGGGG
CGGCGGGTGC TGGCCGAGCT GGGCGGGATC AGCGCGAGCC TGGGGGTGGT GGTGTGCGCG
GACGTCGAGC CGGAGGACAC CGCGCAGGCC GTGCTGCACC GCGCCGACCA GGCCATGTAC
CGGGCGAAGC GGCGCGGCGG GGGTGGGCTG GTGGTGGGCT AG
|
|---|
| Protein sequence | MLGGPGFGGL VAVVLGAAAL VAGTAASGVL GETGSTALDD LAQLAAGLFA ATACLVTARR
AHGPDRRWRV LLGLGALSWS AGQAAWTWQQ LVLGRAVPSP TVADAGYLGL VPFALAALLV
LGGHRATPPP EVRTPLVPPL DGLIVAGSLF LLTWSSSLGA LVARGVPDPV AFLVAVAYPV
TDLVLLVVVV VLAAGRDVVL RSQLRLIGLG LAGLAVSDGT FAYLVSAQAP AVPPLANAGF
TLGPALLGLA ALAPPPADRG EARASAGPRR THLLLPYLPL LLSWAVVLHR TASGTAGELD
GVEVACGFTV FGAVVARQLV ALVANTRLAA LLRASERELA HRATHDPLTG LAGRALFERR
LAEAVAEHQV EGTPFGVLFV DLDRFKAVND TEGHASGDAL LGRVAGHLRA CVRDVDVVAR
LGGDEFAVLI TGAQDPEAVG RRVLAELGGI SASLGVVVCA DVEPEDTAQA VLHRADQAMY
RAKRRGGGGL VVG
|
|---|
| |