| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4926 |
|---|
| Symbol | |
|---|
| ID | 8329124 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 5875296 |
|---|
| End bp | 5876483 |
|---|
| Gene Length | 1188 bp |
|---|
| Protein Length | 395 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 644945366 |
|---|
| Product | transcriptional regulator, CdaR |
|---|
| Protein accession | YP_003102598 |
|---|
| Protein GI | 256378938 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.378586 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGGGTG ACAAGGCGCC GCCGCGGATC GCGGGCCGGG CGGTGGCCCC CGCGCTGCGG
GCGGGCGCCT CGGCGCTGGC GGCGCGCGTG GTGGAGCGGT TGACCGCCGA GCTGCCGGTG
TACGCGGACC TGCCGCGCGA GGAGGTCGCG GGCGACATCA CCGCGATCGT GCGGCACAAC
CTGCTGGTGT GCGCGGACGT GCTGGAGCGG CGCGGGCCCG CGACCGAGGT CGAGCTGCGC
CCGCAGCGCG AGTCGGCGGA GCTGCGCGCC GAGGAGGGCG TGCCGCTGGA GGCGGTGCTG
TCGGCGTACC AGCTGGGCGC GTCGCTGTGC TGCCGGGCGC TGATCGAGGA CGCGGGGCCG
GACGACCTGC CGACCGTGCT GGAGGTGGTG GAGGGGCTGC TGGGGTTCCA GCGGCAGCTG
ACCGCCGAGG TGACGCGCGC CTACCAGCGG GCCGCGCTGG ACGGGCGGTC CGGGCGGCAC
GCGCTGCTGG CCGCGCTGCT CGCGGGCGAG GGCCCTGAGG CGCCGGGCGG GTACCTGGCG
CTGGAGCTGC TGCTGCCGCC GCACCGGGAC GAGTCGGGCG CGGGGGCGCG GATCTCGGCG
CGGCGGAAGC TGCGGCGGGT GCTGGCGGTG CTGGACGGGT TCGCCGACGA GCCCGCGCTG
ACCGCGCTGG ACCACGCGGG TGGCACCGCG CTGCTGCCGC TGGCGGCCGA GCCCGCGTGG
CCCGCGGTGC GGGCGCTGGT GGAGCGGTTG GCGCGGGCGG CGGACGTGCC GGTGACGGCG
GCGGCCGGGT ACGCGGGCGC GCCGGGGGTG CCCGCGGCGG TGGCGCGCAA CGCGGAGGTG
CTGGAGGTGG TGCTGCGGAC CGACCGGGGG CCCGGCGCGC ACCGGTTGGC GGACGTGCTG
CTGGACTACC AGCTGAGCAG GCCGAGCGGG GCGCTGCTGC CGCTGGCGGG GCTGGTGGCC
GCGCTGGAGC CGAGGCCGGA GCTGCTGCGC ACCCTGGAGG TGCACCTGGC ACTGGATCTG
GACCGCAGGG CGACGGCGGC CCGGCTGCAC CTGCACCCGA ACACGGTCGA CTACCGGTTG
CGCCGCATCC ACCGGTTGAC CGGGTTGTCG CCGACCCGGC CGCAGGACTG CCGCAGCCTG
GCGGCGGCGC TGGTGGCCCG CAGGTTCACC GGCGACCCGC GCCCCTGA
|
|---|
| Protein sequence | MTGDKAPPRI AGRAVAPALR AGASALAARV VERLTAELPV YADLPREEVA GDITAIVRHN
LLVCADVLER RGPATEVELR PQRESAELRA EEGVPLEAVL SAYQLGASLC CRALIEDAGP
DDLPTVLEVV EGLLGFQRQL TAEVTRAYQR AALDGRSGRH ALLAALLAGE GPEAPGGYLA
LELLLPPHRD ESGAGARISA RRKLRRVLAV LDGFADEPAL TALDHAGGTA LLPLAAEPAW
PAVRALVERL ARAADVPVTA AAGYAGAPGV PAAVARNAEV LEVVLRTDRG PGAHRLADVL
LDYQLSRPSG ALLPLAGLVA ALEPRPELLR TLEVHLALDL DRRATAARLH LHPNTVDYRL
RRIHRLTGLS PTRPQDCRSL AAALVARRFT GDPRP
|
|---|
| |