Gene Amir_4870 details

Gene Information

• Locus tag: Amir_4870
• ID: 8329068
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: -
• Start bp: 5806663
• End bp: 5810106
• Gene Length: 3444 bp
• Protein Length: 1147 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644945310
• Product: LamG domain protein jellyroll fold domain protein
• Protein accession: YP_003102542
• Protein GI: 256378882

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000290642
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGGTCGC ACTCGCGTGC GCCGGGCTTC AGCCTGCGCG CGTTCACCTC AGGAATCGCG 
TTCGCCCTGC TGGCGAGCAC CGTCACAACA CTTGCGCCGC CCATCGCGGC GGCTGATCCG 
GTCGACGTCC CCAACGTCGC GGCGGACCCG GCAACCGCCG CCCGCTACGC GGCCACCAGC 
GGCGAACCCG TCCAAGTCAC CTCCGCCACG TCGGAGAACG AGGAGCTGTT CGCCAACCCC 
GACGGCACCA TGACCTACCG GCAGCACGTG CAGCCGGTCC GCGTGCGGCA GGGCGGCGAC 
TGGGTGCCGG TCGACCTGGA GCTGGAGCGC AAGCCGGACG GTGCCATCGT CCCCAAGGCA 
GCCCCCGTCG AGATGGAGTT CTCCGGCGGC GGCGGTGACA AGCCAGTCGG CAAGGTCGTC 
AGCGGCGAGC ACGAGGTCGG TTTCAGCTGG CCCACGCCGC TGCCCGCCCC GGTGCTAGAC 
GGCGCCACCC TCACCTACCC CGCCGTCCTG CCCGACGTGG ATCTCAAGGT CGAGGTCGGG 
CTCAAGGGGT TCAGCCAGGT CCTCGTCGTC AAGACCCCCG AGGCCGCCGA CAACCCCGCG 
CTGCGACGCA TCGAGTTCCC CTCCCACACC GAGAACGTCA GCCTCCACGA GGACCAGGGC 
GCCCTAGCCG CCAAGAACGC CGAAGGCGCC ACGGTCTTCA CCGGGGACGC CACCCGCATG 
TGGGACTCCT CCGGGCAGCA GGAGGGCGAG CGCATCGCGG GTCCCGGCCC CGGCGACCGC 
ACCGCGACCA TGGACGTCGA GGTCACCCCG GACGCCGTCG CGGTGACCCC GGACCAGTCC 
TTCCTCGACG ACCGGGCCAC CACCTACCCG GTGCACATCG ACCCGAACTA CTACTGCACC 
AGCTGCGGCA AGGCGCACCA CGTCGTGGTC GAGTCGCCGT GGCCGGACGC CAAGAACTTC 
GACGTCACCA GCGGCAGGCT CAACGACCTC AAGGTCGGCA AGGTCAACGG CGCCGAGATG 
CAGAGCCCGA ACGGCGCTGC GGGCACCGCC CGCAGCTACG TCCAGATGAA CACCCAGGCC 
ATCCTCGGCA AGCACATCGA GTCGGCGACC CTGCGCACCA AGGTGATCCA CTCCTACTCG 
TGCTCGCCGG GCAACGCGTC GGTGTGGCTG ACCGAGTGGG TGGACGCGAA CACGACGTGG 
CGCAACCAGA CCGCGTGGAC CCGCAAGCTC TCCGAGGCCA ACCGGGCCAA CCACCCCGCC 
GTCTGCCCAT CCGACGGGAC GATGGACTTC GACGTCAGCT CGGCGGTGCG CGACGCGTCG 
GCGGGCGGTT GGGGCATCAC GACCTTCGCG ATCGTCGCCA GCAACGAGAA CGAGCAGGAC 
AAGTCCTGGC GGCGCCTGGA CCTGAACCCG TACCTGGAAG TCAGGTACAA CAGCTACCCG 
AACCCGCCCA CCGACCTCGG CATGGAGGGC CTCGGCCCGG ACGGTTCGCA GGCACTCCCG 
TGCCGGGTAG GCGCGGATCG GTCGTACGTG ACCAACCACA TCCCCAGGCT CAGGGCCCGC 
GTGTCCGACC CGGACGGCGG CATCCTGGAC ACCGCCTTCA AGCTCTTCAA AGGACCCCAG 
GGCGCGATCA CGGCCGAGTA CCCCGAGTTC TACGCCAGCG ACATCCCCTC CGGGCAGTTC 
GGCGAGGCAC GGGTGCCCAC CGGCCTGATC ACCCAGGACG GGGTCTACAC CTGGCGCGCC 
TGGGCCGGTG ACCGGCAGTT CCACACCTGG TCGCAGGACT GCGAGTTCGA GGTCGACAGC 
GTCAAGCCGT CCACGCCGCT GATCACCTCC ACCGATTACC CGCAGGACGG CGACCACGGC 
AGCGTCGGGC GCACCGGTCA GTTCACCTTC AAGGTCAACG GCAACACCGG GCCGGGCGGC 
AGCATGGACG TCAAGGAGTA CACCTGGTCG CTCAACGGCG GCGAGGGCGT CGTCTACACC 
GAGCCGGTGA CGACGGCGGA CGGCACGACC GCCGTGTCCG TCACGCCCAC CAAGCCGGGG 
CTCAACATCC TCCATGCCTA CGCCGTCGAC CGCGCGGGCA ACCGCTCGGC GACCCTGGCC 
GAGTACCGGT TCACCGTGAC CCCGCCGCAG CCGCCGCTCG CCGAGTGGAC CTTCGACCAG 
AGCTCCGGCA CGACCGTTCC GGACACTGGC GCGCTGGACC GTCCTCTCAC CCTGGTCGGC 
GGGGCGGAGT TCGAGAAGGG CTACGCGGAC AACGCCCTCA AGCTCAACGG GACCAACGCC 
TCGGCGCAGA GCACGACAGC GATCGTGAAC ACCTCGAAGG CCTTCTCCGC AGCGGCCTGG 
GTCCGGCTCG ACCGGACCGA CGGCTACTAC ACCGTGCTCA GCCAGGACGG CAACCGCGTC 
AGCCCGTTCT ACCTCCAGCA CGACCCGCAG GCCCAGCGCT GGCGGATCAG CGCGAGCAAG 
GGCGATCACG ACCTGCCGGA CACGGTCGCG GTCAACTCGC TGGCCCCACC GGAGGCCGGC 
GCCTGGACCC ACCTGGCCAT CACCTACGAG CCGAACTCCC GCACGACCAA GCTCTACGTC 
GACGGGAAGT TGCAGGGCTC GGCGCAGATG ACCTTCTGGG TCGCGTCCGG CAGCTTCGTC 
GTCGGCGGAG CCCGGTGGTC CGGCGAGCGC GCCAACCACT TCCCCGGCGC GATCGACCAC 
GTGCAGCTGT GGGACCGGGT ACTCGGCGAT GAGGACGTGG CGACTTCGGC GAACCTCGCC 
GTGCTGCGCG CCCGCTACGC GCTCGACGAG CGCACCGGCG TCACTGCCCG CGACGAGATC 
TCCGGCAGCG ACGGAGTCCT CTCCGGTGGC GTCGCCTGGG GTGGTGACGC GCGCACCGCG 
GCGAGCAGCC AGCGCAAGTG GCTGTCCTAC GACAACACGT CGACCGGCAG GGCCACCGGC 
CCGCGCCCGG AGCAGTTCCG CACCGACCGC TCCTACACCG CGTCGGTCTG GGTGCGGCAC 
AGCGGGTTCG ACGAGCCCTC GCGCGCTGGC CTCAGCACCG GTGACGACCG CTACTCGCCC 
TTCCTGCTCG GCTACCGGGG CGAGAGCGGC AAGTGGGGCT TCCTGGTGAG CGGCTCCGCC 
ACCGTGGACG GCGGGTGGTT CGCGCTCTCC GACAACCCCG CGCGGCAAGG CAAGTGGACT 
TACCTCGTGG CCACCTATGA CGCGGTCGCG GGCCGCATCG ACCTGTACGT CGACGGCGTC 
AAGCAGAAGA CCTACCAGGA CACACCTGAC GGTTCCGGTG TGCGGAGCAG GAACTCCACC 
GGGTCACTGA TCATCGGCAG CGCCACCTGG CACGGCCTGG TGTCCGACAC GTGGAAGGGC 
GACGTGGACG ACGCGCGCGT CTACTCCGGC GTGCTCACGA CCAATGAGAT CCGCAGGCTC 
CACAACGCCA CATTCCACTC CTGA 

 

Protein sequence

MRSHSRAPGF SLRAFTSGIA FALLASTVTT LAPPIAAADP VDVPNVAADP ATAARYAATS 
GEPVQVTSAT SENEELFANP DGTMTYRQHV QPVRVRQGGD WVPVDLELER KPDGAIVPKA 
APVEMEFSGG GGDKPVGKVV SGEHEVGFSW PTPLPAPVLD GATLTYPAVL PDVDLKVEVG 
LKGFSQVLVV KTPEAADNPA LRRIEFPSHT ENVSLHEDQG ALAAKNAEGA TVFTGDATRM 
WDSSGQQEGE RIAGPGPGDR TATMDVEVTP DAVAVTPDQS FLDDRATTYP VHIDPNYYCT 
SCGKAHHVVV ESPWPDAKNF DVTSGRLNDL KVGKVNGAEM QSPNGAAGTA RSYVQMNTQA 
ILGKHIESAT LRTKVIHSYS CSPGNASVWL TEWVDANTTW RNQTAWTRKL SEANRANHPA 
VCPSDGTMDF DVSSAVRDAS AGGWGITTFA IVASNENEQD KSWRRLDLNP YLEVRYNSYP 
NPPTDLGMEG LGPDGSQALP CRVGADRSYV TNHIPRLRAR VSDPDGGILD TAFKLFKGPQ 
GAITAEYPEF YASDIPSGQF GEARVPTGLI TQDGVYTWRA WAGDRQFHTW SQDCEFEVDS 
VKPSTPLITS TDYPQDGDHG SVGRTGQFTF KVNGNTGPGG SMDVKEYTWS LNGGEGVVYT 
EPVTTADGTT AVSVTPTKPG LNILHAYAVD RAGNRSATLA EYRFTVTPPQ PPLAEWTFDQ 
SSGTTVPDTG ALDRPLTLVG GAEFEKGYAD NALKLNGTNA SAQSTTAIVN TSKAFSAAAW 
VRLDRTDGYY TVLSQDGNRV SPFYLQHDPQ AQRWRISASK GDHDLPDTVA VNSLAPPEAG 
AWTHLAITYE PNSRTTKLYV DGKLQGSAQM TFWVASGSFV VGGARWSGER ANHFPGAIDH 
VQLWDRVLGD EDVATSANLA VLRARYALDE RTGVTARDEI SGSDGVLSGG VAWGGDARTA 
ASSQRKWLSY DNTSTGRATG PRPEQFRTDR SYTASVWVRH SGFDEPSRAG LSTGDDRYSP 
FLLGYRGESG KWGFLVSGSA TVDGGWFALS DNPARQGKWT YLVATYDAVA GRIDLYVDGV 
KQKTYQDTPD GSGVRSRNST GSLIIGSATW HGLVSDTWKG DVDDARVYSG VLTTNEIRRL 
HNATFHS