| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4575 |
|---|
| Symbol | |
|---|
| ID | 8328773 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 5421259 |
|---|
| End bp | 5421969 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644945027 |
|---|
| Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
|---|
| Protein accession | YP_003102259 |
|---|
| Protein GI | 256378599 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01454] 3-amino-5-hydroxybenoic acid synthesis related protein
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATCCCGG TGCGGGCGGT GGTGCTGGAC CTGGACGGGG CGGTGGTGGA CAACAAGGCC
GTCACCACCG CCGCGCTGAC CACCGCCTGG ACCAAGGAGG GCCGGGACGG GCTGCCACCG
GTCGCGGACT TCCGGGCGCT CTCCGGCCCA CCGGTGGCGC AGGTGTTCAG GACGATGGGC
CTGCCCGAGA CGATGATGCG GCGCTACCTG GCCGCCGCCG CGAAGCTCAC GCACCTGGTG
CGGCCGGTGC CGGGCATGGT CGAGCTCGCG CACGCCCTGC ACGCCGCCGG GGTCCCCGTC
GCCGTCGCCA CCAACAAGTC CCAGAACCGC GCGAAGGCGG TGCTGGAGCA CGTGGGCCTG
AGCCCGATCC TGGGGGCGCT GCTGACCTGC GGCCAGGCCC GGCCCAAGCC CGACCCGCAG
ATGCTGACGG CCGCGTGCGA GCTGCTGGGG GTCGGGCCGG AGCGGGCGGT GATGGTGGGC
GACACCGTCA CCGACGTGCG GGCCGCGCGG GCGGCGGGGA TGCGCGCGAT CGCGGTCACC
TGGGGCATGG GCACCCCGCA GGACCTGGCG GCCCAGCAGC CGTGGGCGCA GGTGACGCGG
GTCAGGGCGC TGGTGGCGCT GCTGCGCGGG CAGACCGGCG CGCCCCTGCC GCTGCCGCGC
GAGGAGAACG CGGCCGTCGG GGCGGAGCTG GTCGGCGGCG GCGCGCGGTG A
|
|---|
| Protein sequence | MIPVRAVVLD LDGAVVDNKA VTTAALTTAW TKEGRDGLPP VADFRALSGP PVAQVFRTMG
LPETMMRRYL AAAAKLTHLV RPVPGMVELA HALHAAGVPV AVATNKSQNR AKAVLEHVGL
SPILGALLTC GQARPKPDPQ MLTAACELLG VGPERAVMVG DTVTDVRAAR AAGMRAIAVT
WGMGTPQDLA AQQPWAQVTR VRALVALLRG QTGAPLPLPR EENAAVGAEL VGGGAR
|
|---|
| |