| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3954 |
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| Symbol | |
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| ID | 8328147 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | - |
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| Start bp | 4633741 |
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| End bp | 4637853 |
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| Gene Length | 4113 bp |
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| Protein Length | 1370 aa |
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| Translation table | 11 |
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| GC content | 77% |
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| IMG OID | 644944430 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_003101667 |
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| Protein GI | 256378007 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.364846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCAGG CGGGGCTCGC GTTCCCCGGT GACGGCGAGA TGGCGCGGCT GATGCGCGCC
CACGCGTGGG CGGACGGCCC GCTCGGACCG GTCGACGACT GGCCCGCGAG CCTGCGCACG
GCGGTGCGGA TCTGCCTGAC CTCGCGGTTC CCGATGATCC TGTGGTGGGG CCCCGAGCTG
CGGTTCCTCT ACAACGACGC CTACCTGCCG CTGCTCGGGG TCAACCACCC CGCGCTCGGC
AAGCCGGGCG AGCGGGTGTG GTCGGAGATC TGGCACATCA TCGGGCCGAT GCTCCGCTCG
GTGCTGGACA CCGGCGAGGC GACCTGGTCC GAGGACCTGC TGCTGCCCAT GCGCAGGCAC
GGGTACCTGG AGGAGACGTA CTGGACGTAC TCCTACAGCC CGCTGCACGA CGACGACGGC
GTGGTGCGCG GGGTGTTCAC CGCCGTCAGC GACACCACCG AGCGGGTCGT GGGCGAGCGC
AGGCTGGCGG TGCTGCACGA CCTGGGCGCG CGGGCGGGCG ACGCCCGCGA CGTGGACGAG
GCGTGCGCGC TGCTGGTGGA CGCCCTCACC GGCCGGGACG TGCCGTACGC GGAGCTGCAC
CTGCGCGATG CCGGGGGCGG GCTGCGGCAC GTCGCCGCCG GACCGGGGGA GCCGCCGCCC
GAGGGGACCT GGCCGCTGCG CGGGGTGCTG GAGAGCGGGG CGCCCGCCGT CGTGGAGGAC
CTGCGCCTGC TCGACCCGCC GCTGCCCGCG GGCGACTGGC AGGCCCCGCC CCAGCGGGCG
GCCGTGCTGC CGCTGCGAGG CGACGGGGAC GAGCCGGTCG GGGTGGTGGT GCTCGCCGCC
TGCGCGGGCC GCGAGCTGGA CGAGCCGCAC CGGGCGTTCC TGTCGCTGGT GGCCCGCCAG
TGCGCGGCCG TGGTCAACGC CGCCCTCGCC TACCGGGCGC AGCAGCGGCG CGCCGAGGAG
CTGGCCGAGC TGGACCGCGC CAAGACCGCG TTCTTCGCCA ACATCAGCCA CGAGTTCCGC
ACCCCGCTGA CCCTGATCAC CGGCCCGCTG CAGGAGCTGC GGGCGCGCGC CGGACCGGGC
GAGCGGGCCG AGCTGGACGT GGTCCACCGC AACGCGCTGC GCCTGGGCAG GCTCGTCACC
GCGCTGCTGG ACTTCTCCCG CATCGAGGCC GGGCGGATGC GGGCCCGCTA CGAACCCGTC
GACCTGGCGG TGGTCACCGC CGAACTGGCC AGCACGTTCC GCTCGGCCGT GGAGAAGGCC
GGTCTGGAGT TCCGCGTGGA CTGCCCGCCG CTGGGCGTCC CGGTGCACCT GGACCGAGGC
ATGTGGGAGA ACGTCGTGCT CAACCTGCTG TCCAACGCGC TCAAGTTCAC CTTCGGCGGG
GGCATCCGCG TCGAGGTGCA CCGCGAGGGC GACAACGCGG TGGTGACCGT CGCCGACACC
GGCGTCGGGG TGCCCGTGGA CGAGCTGCCC CGGCTGTTCG AGCGGTTCCA CCGCATCGAG
AACACCAGGG CCAGATCGGC CGAGGGCAGC GGCATCGGGC TGGCGCTGGT GCGGGAGCTG
GTGGGGCTGC ACGGCGGCGA GATCAGCGCG GCGGGCGCGC CGGGCGGTGG CACGGCGTTC
ACCATCCGGC TGCCGCTGGG CACCGCGCAC CTGCCCGCCG ACGCGGTCGT CGCGGCGGTC
GGCGGGCCCC GCGCGTCGGG GGCGGAGCCG TACCTGCAGG AGGCGCTGCG CTGGCTGCCC
GACGACCGCG ACCCCGCCGA CGCCCCCGGC GCGGCCCCGC TGTCCCAGTC GCCGCTGCGC
GCCCCCGAGT CCGCGCTGCC CGCGCGGGTC GTGGTCGCCG ACGACAACGC CGACATGCGC
GAGTACCTGA CCAGGCTGCT GCGCTCGGCC GGGTACCGGG TGCGGGCCGT CGCGGACGGG
CGGGCCGCGC TGGAGGAGGT GCGCGCCCGC ACCCCGGACC TGGTGGTCAC CGACGTGATG
ATGCCGCGCC TGGACGGCCT GGGCCTGGTC GCCGCGCTGC GCGCCGACCA GCGCACGGCG
GGTGTTCCGG TGGTGCTGCT GTCGGCCCGC GCCGGGCAGG AGGCGTCGAT CGAGGGGCTC
GCGGCGGGCG CCGACGACTA CCTGGTGAAG CCGTTCGCGG CGGCGGACCT GCTGGCGCGG
GTGCGCGCGA ACGTGGAGCT GGCCAGGCTG CGCGACCACC ACGCCCGGTG GCGGGCGGCG
CTGCTGGACT CGCTGCAGGA GGCGTTCTTC GTCTGCGACG AGACCGGCGC GGTCGTGGAG
ATCAACGCCG CGTTCACCAC CGTGCTCGGC TACGGGCCCG AGGGGCTGCC GTACGGGCCG
GTGTACCCGT GGTGGCCCAC CGCCGAGGAC GACCCGGAGG GGCACGCGCG GGTGGAGGAG
GTGTTCACCG ACCTGGTCGG GCCGGGCAGC GGCGCGCACA CCGTCGTGCC GGTGGTGCAC
CGCGACGGGC ACCGGCTGTG GGTGGCCGCC GCGTTCAACC GGGTCGAGGA CCCCGACACC
GGGGACCGGG TCGTGGTCGG CACGTTCCGG GACGTCACCG ACGAGCACTA CGCGGCGGTG
CGGGAGGCGG CGGTCGCGGC GCTGAGCGTG CGGCTGTCCG AGGCGGACGG GGTGTCGGAC
GCGCTGGTCG GCGCGCTGGG GGAGCTGGAC GGGCTGTGGC GGGCCGAGCG GGTCGTCGCG
CTCGTCGGCG CGGGCGGCGA GGAGCTGCTG ACCACCGAGC GGCTGCCCGA GGGCGAGGAG
CCAGGGAGCC GGTGCCCGAA CGCGGACCGC GCCCCGGTCG CGCCCGCCAC CGCCGAGGCG
CTGCGAGCCG CGCTGGACCG GCCGCCGCTG GTGGCGCACT CCGACGGTCC GGGGCTGGTC
GGGATCACCC TGGAGCACCC GGCGGGGATG CTGGCGCTCC GCGTGGAGCT GGGCGGCAGC
AGGCGGTTCG CGGCGCAGGA CGAGGCGCTG CTGGTGCTGC TGGCCGGGCA CCTCGGGCAG
GCGCTGCACC GGCTGCACCA CGTCGACGTG CAGCGGGAGA CCGCGCTCGC GCTGCAGCGG
GCGATCCTGG GCCCGCAGGA GCTGCCCGGC GGGTTCGCCG CCCGCTACGA GCCGGCCACC
CGGCCGCTGG AGGTGGGCGG CGACTGGTAC GACATCGTGC CGCTCGCGGG CGGGCGCACC
GGCATCGTGG TCGGCGACTG CGTGGGCCAC GGGCTGCACT CGGCGACCGC GATGGGGCAG
CTGCGCAGCG CGTGCCGGGC GTTGCTGCTG CAGGACAGCG GTCCGGCGCA GACGCTCAGC
GCGCTGGACC GGTTCGCGAT GACCGTGCCG GGCGCGCGGT GCACCACGGT GTTCTGCGGC
GTGCTGTCGC CGGACACCGG GCACCTGGTG TACGCCAGCG CCGGGCACCC GCCGGGGGTG
CTGGCCAGAC CGGGCGGCGG CGTGGAGCTG CTGGACGGCG GCCGGTCGCT GCCGCTGGCG
GTCCAGCCGG ACCGGCCGCG CACCGAGGCG TGGTGCGACG TGCCCGCGCG CGGCACGCTG
CTGCTGTACA CGGACGGGCT GGTGGAGCGG CGGCGGCAGT CGTTGGACGA CGGGATCGAG
CTGGCCGGTC GGGCGCTGCA GGAGGGCCGC GACGTGTCGG TGGAGGACCT GGCGGCGCAC
GTGATGTCCC GGCTGGCGCC CGCGGCCGGG TTCGAGGACG ACGTGGCGGT CCTGCTGTAC
CGGCGGCCGG GCCCGCTGGT GGTGGAGTTC CCGGCGGACG CGCTGGAGCT GACGCGGGTG
CGCGGCCTGC TGCGCGACTG GCTGGCCGCG TGCGGCGTCG GCCGGGGGCA GGCGCAGAAC
GTGCTGGTGG CGGCGGGGGA GGCGTGCGCG AACGCGGTGG AGCACGGCCA CCGCGACCGG
CCGGGCGGGC AGGTGGTGCT GCGGGCCAGC GCGACCGTGG AGCGGCTGCG CCTGGTCGTC
GCGGACAGCG GCGCGTGGCG GGCCCCCGTC GCGGGCGGCG ACCTGGCGCG CGGGCACGGC
ATCGGCCTCA TGCGCGCCCT GGTGGACGAG GTGGCCGTGC GCCCCGGACC GGGCGGGACG
GTCGTGGAAC TGCGGACGAG GATCACCCCA TGA
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| Protein sequence | MAQAGLAFPG DGEMARLMRA HAWADGPLGP VDDWPASLRT AVRICLTSRF PMILWWGPEL
RFLYNDAYLP LLGVNHPALG KPGERVWSEI WHIIGPMLRS VLDTGEATWS EDLLLPMRRH
GYLEETYWTY SYSPLHDDDG VVRGVFTAVS DTTERVVGER RLAVLHDLGA RAGDARDVDE
ACALLVDALT GRDVPYAELH LRDAGGGLRH VAAGPGEPPP EGTWPLRGVL ESGAPAVVED
LRLLDPPLPA GDWQAPPQRA AVLPLRGDGD EPVGVVVLAA CAGRELDEPH RAFLSLVARQ
CAAVVNAALA YRAQQRRAEE LAELDRAKTA FFANISHEFR TPLTLITGPL QELRARAGPG
ERAELDVVHR NALRLGRLVT ALLDFSRIEA GRMRARYEPV DLAVVTAELA STFRSAVEKA
GLEFRVDCPP LGVPVHLDRG MWENVVLNLL SNALKFTFGG GIRVEVHREG DNAVVTVADT
GVGVPVDELP RLFERFHRIE NTRARSAEGS GIGLALVREL VGLHGGEISA AGAPGGGTAF
TIRLPLGTAH LPADAVVAAV GGPRASGAEP YLQEALRWLP DDRDPADAPG AAPLSQSPLR
APESALPARV VVADDNADMR EYLTRLLRSA GYRVRAVADG RAALEEVRAR TPDLVVTDVM
MPRLDGLGLV AALRADQRTA GVPVVLLSAR AGQEASIEGL AAGADDYLVK PFAAADLLAR
VRANVELARL RDHHARWRAA LLDSLQEAFF VCDETGAVVE INAAFTTVLG YGPEGLPYGP
VYPWWPTAED DPEGHARVEE VFTDLVGPGS GAHTVVPVVH RDGHRLWVAA AFNRVEDPDT
GDRVVVGTFR DVTDEHYAAV REAAVAALSV RLSEADGVSD ALVGALGELD GLWRAERVVA
LVGAGGEELL TTERLPEGEE PGSRCPNADR APVAPATAEA LRAALDRPPL VAHSDGPGLV
GITLEHPAGM LALRVELGGS RRFAAQDEAL LVLLAGHLGQ ALHRLHHVDV QRETALALQR
AILGPQELPG GFAARYEPAT RPLEVGGDWY DIVPLAGGRT GIVVGDCVGH GLHSATAMGQ
LRSACRALLL QDSGPAQTLS ALDRFAMTVP GARCTTVFCG VLSPDTGHLV YASAGHPPGV
LARPGGGVEL LDGGRSLPLA VQPDRPRTEA WCDVPARGTL LLYTDGLVER RRQSLDDGIE
LAGRALQEGR DVSVEDLAAH VMSRLAPAAG FEDDVAVLLY RRPGPLVVEF PADALELTRV
RGLLRDWLAA CGVGRGQAQN VLVAAGEACA NAVEHGHRDR PGGQVVLRAS ATVERLRLVV
ADSGAWRAPV AGGDLARGHG IGLMRALVDE VAVRPGPGGT VVELRTRITP
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