| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3823 |
|---|
| Symbol | |
|---|
| ID | 8328015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4485690 |
|---|
| End bp | 4486862 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644944310 |
|---|
| Product | protein of unknown function UPF0118 |
|---|
| Protein accession | YP_003101548 |
|---|
| Protein GI | 256377888 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0609806 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGCCA CTGACCGCCG TTGGACCGAC CGGGGGCAGG CCATCGGCCA CGGTGTCACC
TGGCTGGCCA GGTGGAGCAC CCGGCTCGCG CTGGTCGCGA TCGGCGCGTA CCTGCTGGGG
CTGCTGATCG GCAAGCTCTG GGTCGTGGTC ATGCCGGTGC TGCTCGGACT GCTGATCACC
ACGGTGCTGT GGCCGCCCGC CCGCTGGCTG CGCGCCAAGG GCCTCCCGCC CGCGCTGGCC
GCCTCGATCG TGCTGCTGCT CGGGCTCGGC GTGCTCGGCG GGATGATCGC GCTGATCAGC
TCCTCCATCG CGTCCGGGGC CGACGACATC GCCGACAGCG CGACCGAGGC GCTCGGCCAG
GCCAGGCAGT GGGTGAGCGG GCCGCCGCTG AACCTGGGCG ACGGGCAGTT CGACGGGCTG
ATCCAGAAGG GCGTGCAGCA GCTCCAGGCC AGCATCGGAT CGATCGCGAA CAGCCTGCTC
ACCGGGGTCG GCACGGTCAC CTCGGGCGTG GTCACCGGGC TGGTGGCGCT GCTGCTGGCG
TTCTTCTTCG TCAAGGACGG GCCCCGGTTC ATCCCGTGGC TGCGCGCGCT GGTCGGCGAG
CGCGCGGGCG GCCACCTGGC GATCGTGCTG GACCGGGTGT GGGGCACGCT CGGCGACTTC
ATCCGCACCC AGGCCATCGT GAGCCTGTTC GACGCGGTGC TCATCGGGCT CGGCCTGGTG
TTCCTCGGGG TGCCGCTGGC CGTCCCGCTG GCGGCGCTGA CGTTCCTCGG CGGGTTCATC
CCGATCGTGG GCGCGTTCAT CGCGGGCGCG ATGGCGGTGC TGGTGGCGCT GGTGAGCAAC
GGGTTCACCG CCGCGGTGAT CATGCTGGTG GTCGTGGTGG CGGTGCAGCA GATCGAGGGC
AACGTGCTCC AGCCGATCCT GCAGTCGCGG AGCCTGAAAC TGCACGCGGC CGTGGTGCTG
CTGGCGGTCA CGGCGGGCAG CAGCCTGTAC GGGATCGCGG GCGCGTTCCT GGCGGTGCCG
GTGGTGGCGA CCGCGGCGGT GGTGGCCAGG TACCTGGGCG AGGTGGTCGA CGCCCGGCTC
GCACCCGCCG CCGAGGCCGC GCCGGAGGCC GTCGACCACG AGGTGCCGGT GACGCCGGCG
AAGGCCGGGG AGGAACCGGC CTCGGGGAAG TGA
|
|---|
| Protein sequence | MSATDRRWTD RGQAIGHGVT WLARWSTRLA LVAIGAYLLG LLIGKLWVVV MPVLLGLLIT
TVLWPPARWL RAKGLPPALA ASIVLLLGLG VLGGMIALIS SSIASGADDI ADSATEALGQ
ARQWVSGPPL NLGDGQFDGL IQKGVQQLQA SIGSIANSLL TGVGTVTSGV VTGLVALLLA
FFFVKDGPRF IPWLRALVGE RAGGHLAIVL DRVWGTLGDF IRTQAIVSLF DAVLIGLGLV
FLGVPLAVPL AALTFLGGFI PIVGAFIAGA MAVLVALVSN GFTAAVIMLV VVVAVQQIEG
NVLQPILQSR SLKLHAAVVL LAVTAGSSLY GIAGAFLAVP VVATAAVVAR YLGEVVDARL
APAAEAAPEA VDHEVPVTPA KAGEEPASGK
|
|---|
| |