| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3796 |
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| Symbol | |
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| ID | 8327988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Actinosynnema mirum DSM 43827 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013093 |
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| Strand | + |
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| Start bp | 4454686 |
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| End bp | 4456479 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 644944284 |
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| Product | Ricin B lectin |
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| Protein accession | YP_003101522 |
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| Protein GI | 256377862 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3345] Alpha-galactosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.475116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCGGT CCACCCCCTG CGGAGTCGGC GCGCGACGCT CACCCGGCCG CCGGGCGGGC
AGACCACCCG GCAGGCTCGC CGCGCTGGTC GCGGCGGCGC TGGTCGCGGT GGGGCTCGTC
CCCGCCCAGG CCGCGACCGG TTCGGCGGAA CCGGCGTTAG CCGCAGCGGG CGCGGAGACA
GCGGGCCGGT CGGCGCCTGA CCAGGTCGCG CCGGCAGCGG GCTCCCCCGC CGACGTGCGC
CCCGCCGACG TGCGCCCCGC CGCCCCCGGC AGCCCGGCGA CCACCCCGCC GATGGGCTGG
AACTCCTGGA ACACCTTCGG CTGCAACATC AGCGAGAGCA CGATCCGCGA CGGCGCCGAC
GCGCTGGTCT CCTCCGGGAT GCGCGACGCC GGCTACCAGT ACGTCGTCGT GGACGACTGC
TGGTTCGACG TCCAGCGCCT GCCCGACGGC AGCCTGCGCG GCGACCCCAC CCGGTTCCCC
AGCGGCATGA AGGCGCTCGG CGACTACATC CACGCGCGCG GCCTGAAGTT CGGCATCTAC
CAGGTGCCCA CCGACCGCAC CTGCGCCCAG CGCGGCGGCG CCTACCCCGG TTCCACCGGC
AGCGTCGGGC ACGAGGAGCT GGACGCCCGC ACGTTCGCCT CCTGGGGCGT GGACTACCTC
AAGTACGACT GGTGCTCCCC CGAGGGCGAC CGGGACGAGC AGGTCGCCCG GTTCGCGCTG
ATGCGCGACG CGCTGCGCGC CACCGGCCGA CCGATCGTGT ACAGCATCAA CCCGAACAGC
TACCACGCGA TCACCGGTTC CACGTACGAC TGGGGCGAGG TCGCGGACCT GTGGCGCACC
ACCGAGGACC TGCTGGACAT CTGGCGCAAC GAGAACACCA ACAGCTACCC GATGGGCGTG
GTGAACGTCG TCGACGTGAA CGCCCCGCTC GCCGCGCAGG CCGGGCCCGG CCGGTGGAAC
GACCCGGACA TGCTGGTGGT GGGCAGGCCG GGCCTGACGA CGCAGCAGTC GCGGGCGCAC
TTCGCGCTGT GGGCGCTGAT GGCCGCGCCG CTCATGGCGG GCAACGACGT GCGCGCCATG
CCCGCCGAGA TCTCCTCCAT CCTGCGCACG CCCGGCCTCG TCGCGGTGAA CCAGGACGCG
CTGGGCGCGG GCGGTCGCCG GGTGCGCGAC GACGGCGACA CCGAGGTGTT CGCCAAGCCC
CTGGCCGACG GGTCGGTCGC GGTGGGCCTG TTCAACCGGG GCGCGCAGCC CGCGCGGATC
AGCGCGGGAC CGGCCGAGGT CGGGCTGGCC GGGACGTCGC TGGCGCTGAC CGACCTGTGG
ACCGGGGCGA CCTCGACCGG CGCGCGGATC ACCGCGGACG TGCCCTCGCA GGGGGTCGCC
GCGTTCCGCG TCACCGGGGC GGGGCCGCTG GCCCAGCAGA CCGGGACGCT GCTGGGCGTG
GCGTCGCGGC GCTGCCTGGA CGTGCCGGGC GCGGTGACGA CGCCCACGGC GCGGCCCGCG
CTGTGGGCGT GCCACGGTGC GGCGAACCAG CTGTGGACGC TGTGGCAGGG CGGCGAGGTG
CGGATCTACG GGGCGCAGTG CCTGGACCTG CTGGAGACGG GTGGCGCGCC GGGCACCCCG
GTGGTGACGG CGCTGTGCGA CGGGCGGGCC TCGCAGCGGT GGACGCGCGA CGGACAGCGG
CTGGTGTCCA CCTCCGAGGG CACCTGCCTG GACGCGCGCG GCGTCGCGGC GGGCACGGCG
GCGGGGGTCC AGCCGTGCGA CGGGCGCGCC TCGCAGCGGT GGCTGCTGTC CTGA
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| Protein sequence | MPRSTPCGVG ARRSPGRRAG RPPGRLAALV AAALVAVGLV PAQAATGSAE PALAAAGAET
AGRSAPDQVA PAAGSPADVR PADVRPAAPG SPATTPPMGW NSWNTFGCNI SESTIRDGAD
ALVSSGMRDA GYQYVVVDDC WFDVQRLPDG SLRGDPTRFP SGMKALGDYI HARGLKFGIY
QVPTDRTCAQ RGGAYPGSTG SVGHEELDAR TFASWGVDYL KYDWCSPEGD RDEQVARFAL
MRDALRATGR PIVYSINPNS YHAITGSTYD WGEVADLWRT TEDLLDIWRN ENTNSYPMGV
VNVVDVNAPL AAQAGPGRWN DPDMLVVGRP GLTTQQSRAH FALWALMAAP LMAGNDVRAM
PAEISSILRT PGLVAVNQDA LGAGGRRVRD DGDTEVFAKP LADGSVAVGL FNRGAQPARI
SAGPAEVGLA GTSLALTDLW TGATSTGARI TADVPSQGVA AFRVTGAGPL AQQTGTLLGV
ASRRCLDVPG AVTTPTARPA LWACHGAANQ LWTLWQGGEV RIYGAQCLDL LETGGAPGTP
VVTALCDGRA SQRWTRDGQR LVSTSEGTCL DARGVAAGTA AGVQPCDGRA SQRWLLS
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