| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3437 |
|---|
| Symbol | |
|---|
| ID | 8327627 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 4002535 |
|---|
| End bp | 4003248 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 79% |
|---|
| IMG OID | 644943940 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003101180 |
|---|
| Protein GI | 256377520 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00973208 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCTGGCC TGACCGTCGT CACCGGCGGC GGCCGGGGGA TCGGGGCCGC GATCGTGCGC
AGGCTCTCCG CCGACGGCGG CCGGGTCGTG TTCTCCTACC GCGCCGACAC CGCCGCCGCC
CACGCCCTGG CCGCCGAGAC CGGCGCGATC GCCGTGCGCG CCGAGGCGAG CGACCCCGGC
GACGTCGACC GGCTCTTCGA CACCGCCGCC GAGCTCGGCG CCCTCACCGG CGCGGTCGCC
AACGCGGGCA CCACCAGCCC CGTGGGGACC CTGGTCGAGC TGGACGTGCG CGACCTGCGG
CGCGTGGTCG ACGTCAACGT CGTCGGCGCC CTGCTGTGCG CCCGGCGCGC CGCCCGCGAC
CTGCGCGAGG GCGGCGCGCT CGTGGCCATC TCCTCCGCCG CGGCGACCCT CGGGTCACCG
GGGGAGTACG TGCACTACGC GGCCAGCAAG GCCGCCGTCG ACGCCATGGT CGTGGGGCTG
GCCAAGGAGC TGGGGCCGCG CGGGGTGCGG GTCAACGCGG TCGCGGCGGG CACCGTGCGC
ACCGACATCC ACCGCGTCTC CGGGGTCCCC GACCGCCCGG ACCGGGTCGC CGCCGCCATC
CCCCTCGGCA GGCCGGGCGA GCCCGAGGAG ATCGCCGCCG CCGTGGCGTG GCTGCTCTCC
CCGGAGGCCT CGTTCACGAC CGGGGCGGTG CTGCGCTCGG CCGGGGGGCT GTGA
|
|---|
| Protein sequence | MAGLTVVTGG GRGIGAAIVR RLSADGGRVV FSYRADTAAA HALAAETGAI AVRAEASDPG
DVDRLFDTAA ELGALTGAVA NAGTTSPVGT LVELDVRDLR RVVDVNVVGA LLCARRAARD
LREGGALVAI SSAAATLGSP GEYVHYAASK AAVDAMVVGL AKELGPRGVR VNAVAAGTVR
TDIHRVSGVP DRPDRVAAAI PLGRPGEPEE IAAAVAWLLS PEASFTTGAV LRSAGGL
|
|---|
| |