Gene Amir_3306 details

Gene Information

• Locus tag: Amir_3306
• ID: 8327496
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 3881218
• End bp: 3881787
• Gene Length: 570 bp
• Protein Length: 189 aa
• Translation table: 11
• GC content: 78%
• IMG OID: 644943818
• Product: regulatory protein TetR
• Protein accession: YP_003101058
• Protein GI: 256377398

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000000516611
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACCACCC GTCCCGACCG CCGGGTCGCC CGCTCCAGGG CCGCCCTCAT GGCCGCCGCC 
GTCGACCTGG TCGCCGAGCG CGGGGCGGCG GTCCCGGTGA CCGACCTGGC CGAGGCCGCC 
GACGTCAGCA GGCAGCTGCT CTACCAGCAC TTCGGCGACC GCGACACGCT CCTCGTCGCC 
GCTGCGGCGG ACCTGGTGCG GCGCGAGCTC CTGCCGCACC TGGCCGACCC GCGGGCCCCG 
CGCCACGCCC GCCTCCTGGC CGTGGCCCGC CACTTCGCCG ACCACCGCCC CTTCTACCGC 
GCCGTGCTCA CCGGCCCGTG CGCGTGGCGG CTGGCGGAGG CCCTGGCCGA GCTCTTCCGC 
ACCCTCATCA CCACCGAGGC CCTGCGCGCC GGCCTGGGCG AGGTGGACGA GCGGGCCGCC 
CGCGACCTGG CCGTGCTGAT CTCCCACGGC ACCGGCGCGA TCGTCCACGA CTGGGTCGTG 
CGCGCCGAGG ACCCGCTGCG CCCCGAGGAA CTCGCCGACC GCCTGCTCAC CGTCACCAGC 
CTGCTCACCC CGGCACCCCC GCACCCCTGA 

 

Protein sequence

MTTRPDRRVA RSRAALMAAA VDLVAERGAA VPVTDLAEAA DVSRQLLYQH FGDRDTLLVA 
AAADLVRREL LPHLADPRAP RHARLLAVAR HFADHRPFYR AVLTGPCAWR LAEALAELFR 
TLITTEALRA GLGEVDERAA RDLAVLISHG TGAIVHDWVV RAEDPLRPEE LADRLLTVTS 
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