| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3212 |
|---|
| Symbol | |
|---|
| ID | 8327402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | - |
|---|
| Start bp | 3742622 |
|---|
| End bp | 3743374 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644943726 |
|---|
| Product | intradiol ring-cleavage dioxygenase |
|---|
| Protein accession | YP_003100966 |
|---|
| Protein GI | 256377306 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.302097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCACGACG ACGACGAACC GATCGGAACC CTGCTGGGCA GGCGCCAGGC GTTGACCCTC
CTGGGCGCCG CAGGCGCAGC CCTGACGCTG GCCGGCGCCA CCTCCGCAGC TCCCGGCGAG
GTGACCCCCG AGCTCGACTG CGTGGCCCGC CCGGACCAGA CCGAGGGCCC GTACTTCGTG
GACGAGAAGC TCAACCGCTC CGACATCAGG TCGGACCCGT CCACCGGCGC GCTCTCCCCG
GGCATCCCCC TCACCCTCTC CTTCACCGTG CTCCAGATCC AGTCCGCGAC GTGCCGCCCC
CTCCCCGGCG CGGTCGTGGA CCTGTGGCAG TGCGACGCGC TCGGCCTGTA CTCCGACATC
CCGTCGGAGG GCTCCAGCGG CCGGAAGTTC CTGCGCGGCC ACCAGGTCAG CGACAGCACG
GGCCTGGCGA GGTTCGTGAC GATCCTGCCC GGCTGGTACC GGGGCAGGAC GATCCACCAC
CACTTCAAGA TCCGGACGAC GGGCGCGAAC GGCGGCGCGT ACGAGTTCAC CTCGCAGCTG
TACCTGGAGG AGGCTTTCAA GGCGGCGTAC CTGAAGCAGC CCCCGTACAA CACCAAGGGC
ACCCCGGACA CCACGAACGC CCGCGACGGC ATCTACGCCC AGGGCGGCAG CCAACTCCTG
CTGAAGCCGA CCGGTTCGAC GAGCGCCGGG TACGCGGCGA ACTTCGCGAT CGGGCTGGAC
CTGTCGGACA CGGGCGTGGG GGCGCCCGAC TAG
|
|---|
| Protein sequence | MHDDDEPIGT LLGRRQALTL LGAAGAALTL AGATSAAPGE VTPELDCVAR PDQTEGPYFV
DEKLNRSDIR SDPSTGALSP GIPLTLSFTV LQIQSATCRP LPGAVVDLWQ CDALGLYSDI
PSEGSSGRKF LRGHQVSDST GLARFVTILP GWYRGRTIHH HFKIRTTGAN GGAYEFTSQL
YLEEAFKAAY LKQPPYNTKG TPDTTNARDG IYAQGGSQLL LKPTGSTSAG YAANFAIGLD
LSDTGVGAPD
|
|---|
| |