Gene Amir_3143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_3143 
Symbol 
ID8327333 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp3629449 
End bp3630141 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content75% 
IMG OID644943661 
Producttranscriptional regulator, TetR family 
Protein accessionYP_003100901 
Protein GI256377241 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCACACC GGGACAACTG TCCCACTGGG ACATTCCAGC AGTACGCTTG TCCCGTGAGC 
GTTCGACCAG AGCCGGTCGT GGACGGCCGG AGGCAGCGGA AGACGCTGCG CACGCGTGAG 
GCGCTCGCCT CGGCGGCGGT GGAGCTCGTG GTGGCGCGCG GACTGCGCGC GGTCACCGTC 
GAGGAGATCG CCGACCGGGC CGACGTCACC CGGCGCACCT TCAGCCGCTA CTTCGCCAGC 
AAGGAGACCG CCGTCCTCGA CGGCGTGCGG GCCGACGGCG ACCGGATCAA CGCCGCCCTG 
CGGGCCCGCC CCGCCGACGA GGACCCGGTG ACGGCCTACC GCGCCGCCGT CCGGGACTGG 
CTCGACGACG AGGGCGAACC CGCCTGGCAC CGCCGCCCCG GCGTCCGCGA CCTGTTGCGG 
CTGACCGAGC GGGAGCCCAC GCTGTTCGGC GCGCACCACC ACCTCCGGGC TCTCGCCGAG 
GCCGAGTCGG TGCGGGTGCT CGCGGAGCGG ATGGGCGTGC CCGAGGACGA CCTGCGGCCC 
GCCGTGGTGG TCGGCGCGGG CGCGGGCGCG CTGGTGGCGG CGACCCGCCT GTGGCTCTTC 
GGCGACGAGG AGCTGCCCGT GCTGGTGGAC CGCGCGTTCG ACGCCCTGGC CGGGGCGCTC 
GCCATACCTA CAACGCAGTG GAGTGCGCCA TGA
 
Protein sequence
MSHRDNCPTG TFQQYACPVS VRPEPVVDGR RQRKTLRTRE ALASAAVELV VARGLRAVTV 
EEIADRADVT RRTFSRYFAS KETAVLDGVR ADGDRINAAL RARPADEDPV TAYRAAVRDW 
LDDEGEPAWH RRPGVRDLLR LTEREPTLFG AHHHLRALAE AESVRVLAER MGVPEDDLRP 
AVVVGAGAGA LVAATRLWLF GDEELPVLVD RAFDALAGAL AIPTTQWSAP