Gene Amir_3025 details

Gene Information

• Locus tag: Amir_3025
• ID: 8327215
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 3495991
• End bp: 3497850
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 77%
• IMG OID: 644943550
• Product: ABC transporter transmembrane region
• Protein accession: YP_003100790
• Protein GI: 256377130
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.946814
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCCTG AGCAGAGCGC CGCGGCGCCC CTGCCCGCAC CCGAGGCGGG ACCCGCACCC 
GACGGCGAAC GTCCCCCCGG CGCACGAACC CCGAGCGACG ACCGGCCCGG CGCCGAGCGG 
CCTGACAGCG AGCAGTCCAG TGATCACCAG CCCGGCGGTG ACCGGTCCGC CCGTGGCCGG 
GAGGCGGGCG TCGAAGCGCC CGGCCGGGCC CTGTTGCGCG ACGTGTTCCG GCGGAACGCC 
CGGTCCACCG CGCTCGGGTG CGCGTTGTCC GTCGTGCACC AGACCTGCGA AGCGCTGGTC 
CCGGTCGCCA TCGGGCTCGC CGTCGACCGG GCCGTGTCCA GCGGGTCGCC GGCCGCGATC 
GCGGTCGCGG TGCTCGGGGT GCTGCTGCTG TTCGCGGTGC TCTCCTCCGG TGGCGGCCTG 
TCGTTCTGGG TGCTCGACCG GACGATCCTC ACCGAGGCGC ACCGGCTGCG CGTGCGCGGC 
ATCGGGCGGG TGCTGACCGA TCCTTCCGTC GGGCAGGACC GCCGGGCCGG TGAGCTGACG 
AACATCCTCA CCTCGGACGC CCGCGCCACC GCCGAGTCGC TGCGCGTGCG GGCCCTGCTG 
GTGTCCGCCT CGGTCGGTCT GACCGTGTCC GTGGTGGTGC TGCTCGGCGT CGACCTGCTG 
CTCGGGCTCG GGGTCGTCGT GGTGCTGCCG CTGCTGGTCC TGGGCGTCGA CCGGCTCGGG 
CCGTGGCTGG AGAACCGGGT GCAGGCACGG CAGGAGGCCG GCGGGCTCGC CGCCGCCGTC 
GCCGCCGAGC TGGTGCACGC CCTGCGCCCG CTGCGCGGCT TCGGGGGCGT GCCCGAGGCG 
GTGCGCCGCT ACCGGATCGC CAGCCGCCGC TCGCTCGGCA CCGCCGTCGA CGCGGCCACC 
GCCTCGTCCG CTCTGGTGGG CGTCGGCCAG ATCGCCACCG GGCTGCTGCT GGTCGGCACC 
ACCGCCGCCG CGGGTCTGAT GGCGCTGTCC GGGCGGATCA GCGTGGGCGA GCTGGTGACC 
GTCGTCGCGA TGGCCTCCTT CGTCGCCGAC CCGGTCCGCT ACATCGCCGA CTGCGTCAAG 
CAGATCGCCG TGTCCCGCGC CAGCGCCGAC CGCGTCGCCG CGCTGCTCGC CCCCGCCCGC 
GCCGAGGAGC GCGCCACCGA CCCCGAGCCC GGTCCGCTGA CCGTGCGCTC GGCCGGTGTC 
GAGTTCACCC TCAAGCCGGG CGAGGTGCTG GGACTGGTGG TCGCCGACCC GGCCGTCGCC 
GACCGGCTCA CCGCCCTGCT CAACGGCGCA GGCCCTGGCG CGTGGCTCGG CGACGTGCCG 
CTCGCCGACG TGGACATGCA CGTGCGCCGC CGCCACCTGC ACGTCGAACC GCACGCCGCC 
CACCTGCTCG GCGGCAGCCT CACCGCCGCG CTCGACACCG GGCGCGCCAC CGACCAGGCC 
GCCGTCGACC GCGCGCTGGC GGCTGCCTCG GCCGAGGACG TCGTCGAGTC GCTGGTCGAC 
GGCGACCTGC ACGACCACGG CGCGAACCTG TCCGGCGGGC AGCGCCAGCG CCTCGCGCTG 
GCCAGGGCGC TCGCCGCCGA CCCGCCGCTG CTGGTGCTGC GCGACCCGCT CACCGCCGTC 
GACGCGGTCA CCGAGCACCG CGTCGCCAGG GGCGTGCACG AGCTGCGCCA CGGCACGGGC 
GCGGGCACCG TCGTGCTGAC CACGTCCCCG CCGCTGCTCT CCCGCTGCGA CCGCGTGGTG 
TTCGTGGCCG CCGAGGTCGA GCAGGCCGGG ACCGGCTCGC GCGGCGACGC CTCGCACGCC 
GAGGGCACCC ACGCCGACCT GTCCGCCATC CCCGCCTACG CCGAGGTGGT GCTGCGATGA 

 

Protein sequence

MSPEQSAAAP LPAPEAGPAP DGERPPGART PSDDRPGAER PDSEQSSDHQ PGGDRSARGR 
EAGVEAPGRA LLRDVFRRNA RSTALGCALS VVHQTCEALV PVAIGLAVDR AVSSGSPAAI 
AVAVLGVLLL FAVLSSGGGL SFWVLDRTIL TEAHRLRVRG IGRVLTDPSV GQDRRAGELT 
NILTSDARAT AESLRVRALL VSASVGLTVS VVVLLGVDLL LGLGVVVVLP LLVLGVDRLG 
PWLENRVQAR QEAGGLAAAV AAELVHALRP LRGFGGVPEA VRRYRIASRR SLGTAVDAAT 
ASSALVGVGQ IATGLLLVGT TAAAGLMALS GRISVGELVT VVAMASFVAD PVRYIADCVK 
QIAVSRASAD RVAALLAPAR AEERATDPEP GPLTVRSAGV EFTLKPGEVL GLVVADPAVA 
DRLTALLNGA GPGAWLGDVP LADVDMHVRR RHLHVEPHAA HLLGGSLTAA LDTGRATDQA 
AVDRALAAAS AEDVVESLVD GDLHDHGANL SGGQRQRLAL ARALAADPPL LVLRDPLTAV 
DAVTEHRVAR GVHELRHGTG AGTVVLTTSP PLLSRCDRVV FVAAEVEQAG TGSRGDASHA 
EGTHADLSAI PAYAEVVLR