| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_3006 |
|---|
| Symbol | |
|---|
| ID | 8327196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 3472791 |
|---|
| End bp | 3473564 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644943532 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003100772 |
|---|
| Protein GI | 256377112 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.829082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACGGAAC ACGTGGTGGC CGAGGCTGAG GCCCTCGGCA AGGTGCACGG GGACGGCGAC
AACGCGGTGG TCGCGCTGGC CGGGGTGTCG GCGCGGTTCA CCAGGGGCGG GTTCACCGCC
GTGATGGGGC CGTCCGGCTC GGGCAAGTCG ACCTTCGCGC ACTGCCTGGC CGGATTGGAC
ACCCCCACGA GCGGGACGGC CCGGATCGGG GGAGTGGACC TCGGGTCGCT GTCCGAGCGG
GAGCTGACCC GGTTGCGGCG CGAGCGCGTC GGCTTCGTCT TCCAGTCCTA CAACCTGCTG
CCCACGCTCA CCGCGTGGGA GAACGTCGTG CTGCCGCTCT CCTTGGCGGA CGAGGAACCC
GAGCAGGCGT GGGCCGACCT GGTGGTGGGC GCGATGGGCC TGTCCGACCG GCTCGACCAC
CGGCCCGCCC AGCTCTCGGG CGGCCAGCAG CAGCGCGTGG CGTGCGCCCG CGCCCTGATC
ACCCGCCCCG ACCTGGTGGT GGCGGACGAG CCCACCGGCA ACCTGGACTC CCGCTCCGGC
GCGCGCATCC TGGAACTGCT GCGCCAGTGC GCCCGCGAGT GGCAGCAGAC CGTCCTGATG
GTCACGCACG ACCCGATCGC CGCCGGTTAC GCGGACCGCG TGCTGTTCCT GGCCGACGGC
AGGCTCGTGG ACACCATGGA GCGCCCCACG GCGGACCGGG TGCTGGACCG GATGCGCGGC
TTCGACGGGC ACGCCGACAC CGTCCCGCAG GACGGCCGGA GGGGGGCTTT CTGA
|
|---|
| Protein sequence | MTEHVVAEAE ALGKVHGDGD NAVVALAGVS ARFTRGGFTA VMGPSGSGKS TFAHCLAGLD
TPTSGTARIG GVDLGSLSER ELTRLRRERV GFVFQSYNLL PTLTAWENVV LPLSLADEEP
EQAWADLVVG AMGLSDRLDH RPAQLSGGQQ QRVACARALI TRPDLVVADE PTGNLDSRSG
ARILELLRQC AREWQQTVLM VTHDPIAAGY ADRVLFLADG RLVDTMERPT ADRVLDRMRG
FDGHADTVPQ DGRRGAF
|
|---|
| |