| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_2952 |
|---|
| Symbol | |
|---|
| ID | 8327141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 3408427 |
|---|
| End bp | 3409050 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644943478 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003100719 |
|---|
| Protein GI | 256377059 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0281323 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATCAGC GAGTTCGGGT GGCGGTGCAG TCGACCGACC ACCTCAGCCT TGCGGGGCTC
ACGAGTTACC TCGCGGGAAG GTCCGAGGTC GTGCTGGTGG GGCAGCGCGA GCGGGCGAGC
GCGGACGTGG CCGTGGTGGC GGTGCCGAAG TTCACCGAGG AGGTCACCTC CCGGCTGCGG
CGCGCCGCGA CCGAGGCGGG GACGCCGGTG GTGCTGGTGC TCGACGAGGT GGGCGACGCG
GACGTGCTCA CCGCCGCCGA GTGCCGGGTC GTGGCGATCG TGCCGCGCAC CGCCGCCACC
GGCGACCGGG TGCTGCGCAG CGTCCTCGCG GCGGCCGAGG GCGGCGGGGT GATGCCGCCG
AACCTGGTGG CCGAGCTGCT CAGGCACGTG CAGCGGCTCC AGCGCGAGCT GGTGGCCACC
GAGACCGGCC CCGACCGGCT CACCTCGCGG GAGGCCGACG TGCTGCGGCT CATCGCGGAG
GGACTGGACA CCGCCGAGAT CGCGACCAGG CTCAGCTACT CGGAGCGGAC CGTGAAGAAC
GTCTTCTACG GCATCACGAC GCGGCTGCAC CTGCGCAACC GGCCGCACGC GGTGGCGTAC
GCGCTGCGGA AGGGGATGAT CTGA
|
|---|
| Protein sequence | MDQRVRVAVQ STDHLSLAGL TSYLAGRSEV VLVGQRERAS ADVAVVAVPK FTEEVTSRLR
RAATEAGTPV VLVLDEVGDA DVLTAAECRV VAIVPRTAAT GDRVLRSVLA AAEGGGVMPP
NLVAELLRHV QRLQRELVAT ETGPDRLTSR EADVLRLIAE GLDTAEIATR LSYSERTVKN
VFYGITTRLH LRNRPHAVAY ALRKGMI
|
|---|
| |